Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000813-TA|BGIBMGA000813-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (317 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    36   5e-04
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 29  IITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRP--CDLA 86
           ++TGANSGIGK   +    +G KV      V K     + +V E  +K     P  CDL+
Sbjct: 11  LVTGANSGIGKCLIECLVGKGMKVIGIAPQVDK----MKTLVEELKSKPGKLVPLQCDLS 66

Query: 87  STASIREFVARFKGEEPHLHVLVNNAGV 114
           +   I + +   +     + +L+NNA +
Sbjct: 67  NQNDILKVIEWVEKNLGAIDILINNATI 94



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 207 TGVATIAVDPGLVDTDIT 224
           + +  I++ P LV+TD+T
Sbjct: 184 SNIKVISISPDLVETDMT 201


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 164 HQRGRIHKQDLNMSENYDASAAYSQS 189
           ++  R H+ D  ++E+YDAS++ S S
Sbjct: 28  YKHSRRHR-DFTVAESYDASSSNSDS 52


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,305
Number of Sequences: 429
Number of extensions: 2955
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 317
length of database: 140,377
effective HSP length: 58
effective length of query: 259
effective length of database: 115,495
effective search space: 29913205
effective search space used: 29913205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)