GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000813-TA|BGIBMGA000813-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (317 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   3.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   3.9  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   9.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.0  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   9.0  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 281 PSQEAQDFELAQWLWRVSEAWTKL 304
           P    + F L   LW+  +AWT L
Sbjct: 25  PYYNFEKFSLEHQLWQKIQAWTYL 48


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/49 (26%), Positives = 21/49 (42%)

Query: 268 CAGDYYVDMKKAEPSQEAQDFELAQWLWRVSEAWTKLDEHKQAIAKDTR 316
           C G+   +   A   + A D   A+   R   A   L +H+ A+A+  R
Sbjct: 267 CGGEEEAERAPAPAVRAAGDAAAARGAARADGAGGPLHDHRPALAQQRR 315


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 245 FMKKPEIGGQTVVHAALDPKLKDCAGDYYVDMKKAE 280
           ++K   +GG  +V  +LD     C  D Y  ++ A+
Sbjct: 401 YVKAKGLGGIAIVDLSLDDFKGTCGRDKYDILRTAK 436


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 168 RIHKQDLNMSENYDASAAYSQS 189
           + H Q L  S   +A AAYS S
Sbjct: 17  QFHHQQLFQSATTEAPAAYSSS 38


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 168 RIHKQDLNMSENYDASAAYSQS 189
           + H Q L  S   +A AAYS S
Sbjct: 17  QFHHQQLFQSATTEAPAAYSSS 38


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,816
Number of Sequences: 317
Number of extensions: 2335
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 317
length of database: 114,650
effective HSP length: 57
effective length of query: 260
effective length of database: 96,581
effective search space: 25111060
effective search space used: 25111060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)