Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000813-TA|BGIBMGA000813-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
(317 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 102 8e-23
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 62 8e-11
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 56 9e-09
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 41 3e-04
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 41 3e-04
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 34 0.023
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 34 0.031
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 33 0.053
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 32 0.12
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 31 0.16
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 31 0.28
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 30 0.38
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po... 30 0.50
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 30 0.50
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po... 29 0.66
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po... 29 0.87
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 27 2.7
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 27 3.5
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 6.1
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 102 bits (244), Expect = 8e-23
Identities = 72/283 (25%), Positives = 127/283 (44%), Gaps = 14/283 (4%)
Query: 26 RTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPCDL 85
+ ++TG++ GIG A + A++GAKV++A R+ +K ++ + I E + + DL
Sbjct: 43 KVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRLDL 102
Query: 86 ASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXXXX 145
S+ + F +E LH+LVNNAG+M PP +TKDG+E Q+
Sbjct: 103 LDFESVYQAAESFIAKEEKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFTELLL 162
Query: 146 XXXKXXXXXXXXXXXXXXHQRGRIHKQ---------DLNMSE-NYDASAAYSQSKLANLL 195
+ H + Q DLN+ A Y QSK A +L
Sbjct: 163 PTLRRTAEECRPGDVRIVHVASIAYLQAPYSGIYFPDLNLPHVLLGTFARYGQSKYAQIL 222
Query: 196 FARELGRRLLGTGVATIAVDPGLVDTDITRHMSMMKSVTRFFIYPLFWPFMKKPEIGGQT 255
++ L +RL G+ ++++ PG++ T++TR+ + +F + P G T
Sbjct: 223 YSIALAKRLEKYGIYSVSLHPGVIRTELTRYSPTF--ALKLLEKSVFQYLLLDPIRGAMT 280
Query: 256 VVHAALDPKL--KDCAGDYYVDMKKAEPSQEAQDFELAQWLWR 296
++AA P++ + G Y+ + + A D + L+R
Sbjct: 281 SLYAATSPEISKEHLNGAYFTAIAQRGILHRAHDDAFVEELYR 323
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 62.5 bits (145), Expect = 8e-11
Identities = 74/320 (23%), Positives = 132/320 (41%), Gaps = 30/320 (9%)
Query: 22 RADNRTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKK--CEEQRRDIVLETNNKYVY 79
+ + +++TG +SGIG+ + A GA+V + R + D+ T N+ +Y
Sbjct: 72 KMNGMVVMVTGGSSGIGQVVVEKLASLGAQVVILLRTEPDQFTVDYIMDLRKRTKNQLIY 131
Query: 80 CRPCDLASTASIREFVARFKGEEP--HLHVLVNNAGVMEPP---KGVTKDGFETQLG--- 131
CDL+S S+R+F ++ P L ++V +GV+ PP + T++G E Q
Sbjct: 132 TEVCDLSSMLSVRKFATKWIDCTPIRRLDMIVLCSGVLLPPFMDRQTTEEGVELQWATNF 191
Query: 132 VXXXXXXXXXXXXXXXXKXXXXXXXXXXXXXXHQRGRIHKQDLNMSEN-YDASAAY---S 187
+ + G I DL++S + Y + +
Sbjct: 192 LGPYQLLRILRPVIYGQPGHREVRIVAATCSSYILGNIDFNDLDLSNHPYPRKSPWKVVG 251
Query: 188 QSKLANLLFARELGRRL--------LGTGVATIAVDPGLVDTDITRHMSMMKSVTRFFIY 239
+KLA + + + ++ + + TI +PG+V T R + V F+Y
Sbjct: 252 NAKLALMTYLYDFQKKAEAHERPDKMPCNLHTIMANPGVVRTPGFRRVVSFGKVWGLFLY 311
Query: 240 PLFWPF----MKKPEIGGQTVVHAALDPKLKDCAGDYYV-DMKKAEPS-QEAQDFELAQW 293
L WPF +K G Q+ HA P+ V + E S +E D E A+
Sbjct: 312 LLLWPFWWLLLKGTIHGAQSFFHAICSPEFASITQPVLVNECSIVEYSRKEITDPEFAEK 371
Query: 294 LWRVSEAWTKLDEHKQAIAK 313
L + ++A ++DE ++ K
Sbjct: 372 LIKAADA--QIDEVEKQYKK 389
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 55.6 bits (128), Expect = 9e-09
Identities = 54/207 (26%), Positives = 81/207 (39%), Gaps = 17/207 (8%)
Query: 22 RADNRTIIITGANSGIGKAAAKDFAK-RGAKVFMACRDVKKCEEQRRDIVLETNNKY--- 77
R D +TI+ITGA+SGIGK+ A + AK K+ +A R EE I E +KY
Sbjct: 3 RLDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVEE----IAKELESKYEVS 58
Query: 78 VYCRPCDLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXX 137
V D++ SI + E + VL+NNAG+ V + + +
Sbjct: 59 VLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGLALGTDKVIDLNIDDAVTMITTNV 118
Query: 138 XXXXXXXXXXXKXXXXXXXXXXXXXXHQRGRIHKQDLNMSENYDASAAYSQSKLANLLFA 197
GR E+Y + Y +K A F
Sbjct: 119 LGMMAMTRAVLPIFYSKNKGDILNVGSIAGR---------ESYVGGSVYCSTKSALAQFT 169
Query: 198 RELGRRLLGTGVATIAVDPGLVDTDIT 224
L + + T + + VDPGLV+T+ +
Sbjct: 170 SALRKETIDTRIRIMEVDPGLVETEFS 196
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 40.7 bits (91), Expect = 3e-04
Identities = 29/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 11 YYSGPPYDRSVRADNRTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCE-EQRRDI 69
Y G + S + + ++TG +SGIGKAAA FA+ G+ + ++C ++ + E RD+
Sbjct: 28 YCDGRVHVGSGKLAEKKTLLTGGDSGIGKAAAVMFAREGSDLVISCLPEERDDAEVTRDL 87
Query: 70 VLETNNKYVYCRPCDLASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGV 121
+ E + + L + + R+ V + + VLVNN + + +
Sbjct: 88 I-EREGRNCWIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQVAQSI 138
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 3e-04
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 28 IIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLET--NNKYVYCRPCDL 85
I++TG + G+GKA AK+ RGA V + R V K +E ++ ++ V DL
Sbjct: 25 ILVTGGSQGLGKAIAKELVLRGANVTIVARTVTKLQEAVAELSDSKIHEDQQVSFESVDL 84
Query: 86 ASTASIREFVAR 97
S S+ + R
Sbjct: 85 TSYESVHSMIER 96
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 34.3 bits (75), Expect = 0.023
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 26 RTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPCDL 85
+T +ITG + GIG + AK FA G+ V + KK E ++ + + C +
Sbjct: 10 KTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAEL-RDKHGVQAKAYSCPI 68
Query: 86 ASTASIREFVARFKGE-EPHLHVLVNNAGVMEP 117
+ +++ E + E L V++ NAG+ P
Sbjct: 69 ENRSAVIETTNQAVEELGGRLDVMIANAGIAIP 101
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 33.9 bits (74), Expect = 0.031
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 26 RTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPCDL 85
+ ++ GA GIG + A FA+ G V + E+ ++ + E V+ D+
Sbjct: 22 KNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKAKK--LAEETGVQVHTLKIDI 79
Query: 86 ASTASIREFVARFKGEEPHLHVLVNNAGV 114
+ + ++ V + +HV+V NAG+
Sbjct: 80 SRSDTVEAGVEEIQKIFKEIHVVVANAGM 108
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 33.1 bits (72), Expect = 0.053
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 9/93 (9%)
Query: 26 RTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCR-PCD 84
+ I++TG++ GIG A A+ K+ AKV R + + ++++ + +V+ +
Sbjct: 7 KVILLTGSSKGIGLATAEALQKK-AKVIAVSRSL---TPELETLLIQNPDSFVHVKGDVT 62
Query: 85 LASTASIREFVARFKGEEPHLHVLVNNAGVMEP 117
ASI + +F G+ L ++ NAGV+EP
Sbjct: 63 EVGKASIETAIKKF-GK---LDSVILNAGVLEP 91
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 180 YDASAAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDT 221
+ A AAY SK A + LG + ++AV PG+VDT
Sbjct: 144 FPAWAAYCCSKAAINMLVMNLGSE--EPDIMSVAVRPGVVDT 183
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 31.9 bits (69), Expect = 0.12
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 2 FVSFLFNRDYYSGPPYDRSVRADNRTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKK 61
F SF++ + G ++TGA GIGK A A G V + R +K
Sbjct: 34 FASFVYKTFFAKGVKLSVYGAKKGYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEK 93
Query: 62 CEEQRRDIVLETNNKYVYCRPCDLASTASIREFVARFKGE--EPHLHVLVNNAG 113
+ ++ LET K V R + T + E + + + VL+NN G
Sbjct: 94 LDALAKE--LETVAK-VKTRTIAIDYTKTTAETFEKLHQDLVGTPITVLINNVG 144
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.16
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Query: 26 RTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPCDL 85
+ ++ G GIG A FA+ GA F+ + E+ ++I + N Y CD+
Sbjct: 22 KNAVVFGGARGIGHAICSVFAEAGANAFIV-YNTTPGEKAAKEIA-QANGVKTYTCKCDV 79
Query: 86 ASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGV--TKDGFETQLGV 132
+ A + + ++V N G+ + T + F ++ V
Sbjct: 80 TIPKEVEHAFAEIQKVFDTIDIVVPNNGICTGKSAIDMTYEEFANEINV 128
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 30.7 bits (66), Expect = 0.28
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 24 DNRTIIITGANSGIGKAAAKDFAKRGAKV 52
+ R ++ITGA GIGK K F + G +V
Sbjct: 4 EGRVVLITGAAGGIGKVLCKMFTELGDRV 32
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 30.3 bits (65), Expect = 0.38
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 184 AAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDI 223
+AY QSK A +E+ L G +++ PG+V+TD+
Sbjct: 157 SAYGQSKAALNYTMKEISFELEKDGFVVVSIHPGVVNTDM 196
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 29 IITGANSGIGKAAAKDFA-KRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPCDLAS 87
+I G N GIG + K+ + K G VF + R E + +N V+ D+ S
Sbjct: 10 VIVGGNRGIGLSLVKELSNKEGVTVFASARGPGSASELKDWSKTHSN---VHIIKLDVTS 66
Query: 88 TASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFE 127
S ++ + + + VL N+G+ + + V K E
Sbjct: 67 LRSAKDAAMQVEKVVKCIDVLWVNSGISKSFQPVLKTSDE 106
>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 29.9 bits (64), Expect = 0.50
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 25 NRTIIITGANSGIGKAAAKDFAKR-GAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPC 83
N+ I G N GIG + K+ + R G VF + R + E + N K V
Sbjct: 5 NKVYFIAGGNRGIGLSLVKELSSREGTTVFASARKPEAATELQEWSKSHPNVKTV---EL 61
Query: 84 DLASTASIREFVARFKGEEPHLHVLVNNAG-------VMEPPKGVTKDGFETQL 130
D+ S S E + VL N+G VME P+ V ++T +
Sbjct: 62 DVTSQQSANEAAQSVAKAVDGIDVLWLNSGICQSYYTVMEAPEEVWNAHYQTNV 115
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 184 AAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDI 223
+AY QSK A +EL L I++ PG+V TD+
Sbjct: 156 SAYGQSKAAINFTMKELSVELADEHFTFISIHPGVVKTDM 195
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 29.9 bits (64), Expect = 0.50
Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 11/196 (5%)
Query: 26 RTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPCDL 85
R ++ITG +SG+GK A+ ++++G + + R+ +E + + + ++ D+
Sbjct: 2 RKVLITGGSSGLGKRIAQIWSQKGHQCHIVGRNEFHLKETLQSLSVAKGQQHT-LTIADV 60
Query: 86 ASTASIREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFETQLGVXXXXXXXXXXXXX 145
S ++ + F+ E + +V+ AGV++ V E +
Sbjct: 61 QS--DMKNLKSIFESVE--IDTVVHAAGVLQSSLCVRTSEKEIDSIICTNLVSAIKLSKM 116
Query: 146 XXXKXXXXXXXXXXXXXXHQRGRIHKQDLNMSENYDASAAYSQSKLANLLFARELGRRLL 205
+ + R+ L + Y AS A +S F + L +
Sbjct: 117 AILEWFRNKNSERDRLILNISSRLSTYALPGTSVYAASKAGLES------FTKVLAAEVA 170
Query: 206 GTGVATIAVDPGLVDT 221
G+ A+ PG VDT
Sbjct: 171 SKGIRVNAISPGYVDT 186
>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 29.5 bits (63), Expect = 0.66
Identities = 20/69 (28%), Positives = 30/69 (43%)
Query: 182 ASAAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDITRHMSMMKSVTRFFIYPL 241
+ +AY QSK A +E+ L G I++ PG V TD + + + + I L
Sbjct: 154 SQSAYGQSKAALNYTMKEISFELQDEGFIVISIHPGAVRTDSAQEIVNQHAEKKPEILDL 213
Query: 242 FWPFMKKPE 250
F PE
Sbjct: 214 FAKQALTPE 222
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 25 NRTIIITGANSGIGKAAAKDFAKR-GAKVFMACR 57
N+ I G N GIG + K+ + R G VF + R
Sbjct: 5 NKIYFIAGGNRGIGLSLVKELSNRKGTVVFASAR 38
>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 29.1 bits (62), Expect = 0.87
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 25 NRTIIITGANSGIGKAAAKDFAKR-GAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPC 83
N+ I G N GIG + K+ + R G VF + R + E + ++ V+
Sbjct: 5 NKIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATELQE---WSKSHSNVHIIKL 61
Query: 84 DLASTASIREFVARFKGEEPHLHVLVNNAGV 114
D++S S E + VL N+G+
Sbjct: 62 DISSLESANEAAQEVAKAVGKVDVLWVNSGI 92
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 184 AAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTD 222
+ Y QSK A +E+ L G I++ PG+V TD
Sbjct: 156 SGYGQSKAALNFTMKEISFELQDEGFIVISIHPGMVRTD 194
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 172 QDLNMSENYDASAAYSQSKLANLLFA 197
+DL +SENY S A S S ++++L A
Sbjct: 122 EDLLVSENYQESTAISDSSVSSVLLA 147
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 170 HKQDLNM--SENYDASAAYSQSKLANLLFARELGRRLLGTGVATIAVDPGLVDTDITRHM 227
H L M S+ + A + + L L A+ELG+RL G + T D G V D+T +
Sbjct: 174 HSSCLEMAGSDRTPSMPATTLADLRLLQKAKELGKRLSGKELPTRVGDNGDVMLDMTGYK 233
Query: 228 SMMKSV 233
S ++
Sbjct: 234 SSAANI 239
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 26.2 bits (55), Expect = 6.1
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 9/87 (10%)
Query: 27 TIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDIVLETNNKYVYCRPCDLA 86
T++ITG++ G+G A K +G V +AC + D + ++K + + D+
Sbjct: 7 TVLITGSSKGLGYALVKVGLAQGYNV-IAC-------SRAPDTITIEHSKLLKLK-LDVT 57
Query: 87 STASIREFVARFKGEEPHLHVLVNNAG 113
S+ K ++ +++NNAG
Sbjct: 58 DVKSVETAFKDAKRRFGNVDIVINNAG 84
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,276,620
Number of Sequences: 5004
Number of extensions: 46133
Number of successful extensions: 134
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 31
length of query: 317
length of database: 2,362,478
effective HSP length: 73
effective length of query: 244
effective length of database: 1,997,186
effective search space: 487313384
effective search space used: 487313384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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