GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000813-TA|BGIBMGA000813-PA|IPR002198|Short-chain
dehydrogenase/reductase SDR, IPR002347|Glucose/ribitol dehydrogenase
         (317 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   4.9  
AJ271117-1|CAB88872.1|  355|Anopheles gambiae serine protease pr...    24   6.4  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 91  IREFVARFKGEEPHLHVLVNNAGVMEPPKGVTKDGFE 127
           + +F A  K  E +++ +V+     E  +G +KD FE
Sbjct: 697 LADFRAELKQTEANINSIVSEMQKTETKQGKSKDAFE 733



 Score = 23.4 bits (48), Expect = 8.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 274 VDMKKAEP--SQEAQDFELAQWLWRVSEAWTKLDEHKQAIAK 313
           VD K +E    Q+    EL  W+ +  EA  KL+E  + + K
Sbjct: 883 VDRKLSEALKQQKTLQKELESWIQKEKEAQEKLEEDGKRMEK 924


>AJ271117-1|CAB88872.1|  355|Anopheles gambiae serine protease
           protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 16  PYDRSVRADNRTIIITGANSGIGKAAAKDFAKRGAKVFMACRDVKKCEEQRRDI 69
           P     R+ NR   ++ A +G GK  +   ++R  KV +  +D  +C +  R I
Sbjct: 230 PLAEPQRSRNRVGTVSFA-AGWGKTESASASERKLKVELTVQDPSRCRQIYRGI 282


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 292,008
Number of Sequences: 2123
Number of extensions: 10054
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 317
length of database: 516,269
effective HSP length: 64
effective length of query: 253
effective length of database: 380,397
effective search space: 96240441
effective search space used: 96240441
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)