Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000812-TA|BGIBMGA000812-PA|IPR001478|PDZ/DHR/GLGF
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 32 0.29
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 29 2.0
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 29 2.7
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 29 2.7
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ... 29 2.7
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr... 29 2.7
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 28 3.6
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c... 28 4.7
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 478 PRPVVNLASDREGFEARKIISGSLNNLTTLVKAQSDTSINTSSTATLT 525
P + N SD EG RK+ S+ + T V A S S+ T ST T T
Sbjct: 507 PSELCNKFSDGEGLPNRKVSKLSVESDETAVSASSGESVPTDSTLTDT 554
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 582 VRSLVPGGVAEKNGEISPGDRVMSVN 607
V + PG AE NGE+SP R+ N
Sbjct: 177 VAGMSPGATAELNGEVSPDRRLFEYN 202
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 28.7 bits (61), Expect = 2.7
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 321 ENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEI-LAVDKEDIVKKWKEEIG 379
E + E+E + S+ + E EEL++ ++ L D EDI K E++
Sbjct: 26 EAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLS 85
Query: 380 SDKEILVAEIKKLEGLGISLEGTVDVEGGQELRPHHYIRSV 420
E+L E++ + L L T + +++ H+ R V
Sbjct: 86 RKVELLEEELETNDKL---LRETTEKMRQTDVKAEHFERRV 123
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 322 NSITEIEPEPESNTTI--DSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKEEIG 379
+ +TE+ E E N I D S+ E + + Q E DE+ ++DI K E+I
Sbjct: 874 DKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIK 933
Query: 380 SDKE 383
KE
Sbjct: 934 EVKE 937
>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 407
Score = 28.7 bits (61), Expect = 2.7
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Query: 372 KKWKEEIGSDKEILVAEIKKLEGLGISLEG-TVDVEGGQELRPHHYIRSVLPDGPVGLQG 430
K++KE+ G + E + E K E GI G + D E + LR H DGP+ L+G
Sbjct: 227 KQFKEKHGVEVEENMLEAAK-EFAGIVFPGISHDWEDLKFLRKHW-------DGPIVLKG 278
Query: 431 VLNAGDELLEVNEYRLHGLTHS 452
++N D V EY + G+ S
Sbjct: 279 IMNVPDAKKAV-EYGMQGIVVS 299
>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 28.7 bits (61), Expect = 2.7
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 160 SVIGDNPQKIPDHPI--VCDSVSPTITITVPVELPEIEIIHV-DLNKNVYGLGITVAGYV 216
+ +G N + DH + + D + +E P++ + + +LN + +T G+V
Sbjct: 143 AALGPNLNNLLDHWLRHIRDVIEDNREELDAIEDPQLRRLKLAELNTRAQAISVTRVGFV 202
Query: 217 CEKEELSGIFVKSIIEGSSAEQSGKIKINDRI 248
E E G+ V I S Q K+ I D I
Sbjct: 203 REAMEKRGLQVHGWIYDLSNGQIKKLDITDAI 234
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 47 KDRRLQSGDHVLQVGSVNLRGFTSEQVAAVLRQAGPVVRLLVAR 90
+++ LQ VL VG + GF +Q+ Q GPV+RL ++R
Sbjct: 96 ENKNLQKKKGVLYVGRLP-HGFYEKQMRMYFSQFGPVLRLRMSR 138
>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 683
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 493 ARKIISGSLNNLTTLVKAQSDTSINTSSTATLTNHSEQSKKSRSLECVSGLA-MWQSKED 551
ARK GSL + +++ +S + + T S T Q +S S VS L+ + K D
Sbjct: 399 ARKSTDGSLGSRVKVLREESQSFVPTKSAVTEQVEPIQLIRSLSANTVSRLSKVGNMKSD 458
Query: 552 IVMLVK 557
I + VK
Sbjct: 459 IWISVK 464
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.133 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,201
Number of Sequences: 5004
Number of extensions: 123022
Number of successful extensions: 283
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 10
length of query: 657
length of database: 2,362,478
effective HSP length: 77
effective length of query: 580
effective length of database: 1,977,170
effective search space: 1146758600
effective search space used: 1146758600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)
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