Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000812-TA|BGIBMGA000812-PA|IPR001478|PDZ/DHR/GLGF
(657 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17740.2 68417.m02649 C-terminal processing protease, putativ... 40 0.005
At4g17740.1 68417.m02648 C-terminal processing protease, putativ... 40 0.005
At1g15740.1 68414.m01888 leucine-rich repeat family protein 36 0.11
At5g03050.1 68418.m00253 expressed protein 35 0.20
At1g55480.1 68414.m06346 expressed protein 33 0.45
At1g11510.1 68414.m01322 DNA-binding storekeeper protein-related... 33 0.45
At3g09130.1 68416.m01074 hypothetical protein 32 1.0
At3g57680.1 68416.m06426 peptidase S41 family protein similar to... 31 1.8
At3g45770.2 68416.m04947 oxidoreductase, zinc-binding dehydrogen... 31 2.4
At3g45770.1 68416.m04948 oxidoreductase, zinc-binding dehydrogen... 31 2.4
At3g03380.1 68416.m00336 DegP protease, putative contains simila... 31 3.2
At4g26630.1 68417.m03837 expressed protein 30 4.2
At1g09000.1 68414.m01004 NPK1-related protein kinase, putative (... 30 4.2
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 30 5.6
At5g46390.2 68418.m05710 peptidase S41 family protein similar to... 29 7.4
At5g46390.1 68418.m05709 peptidase S41 family protein similar to... 29 7.4
At5g38500.1 68418.m04654 hypothetical protein contains Pfam prof... 29 7.4
At2g21970.1 68415.m02610 stress enhanced protein 2 (SEP2) nearly... 29 7.4
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma... 29 9.8
At5g04990.1 68418.m00528 sad1/unc-84 protein-related contains we... 29 9.8
At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containi... 29 9.8
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 29 9.8
At2g46700.1 68415.m05827 calcium-dependent protein kinase, putat... 29 9.8
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ... 29 9.8
At1g09300.1 68414.m01041 metallopeptidase M24 family protein sim... 29 9.8
>At4g17740.2 68417.m02649 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 505
Score = 39.9 bits (89), Expect = 0.005
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 561 GLGFSILDYQDPVDPNGTVIVVRSLVPGGVAEKNGEISPGDRVMSVNGVSIQNATLDQAV 620
G+G SI Y D +VV S PGG A + G I PGD + ++ + + T+ A
Sbjct: 201 GVGLSI-GYPTASDGPPAGLVVISAAPGGPANRAG-ILPGDVIQGIDNTTTETLTIYDAA 258
Query: 621 QALKGAPRGTVKVGI 635
Q L+G V++ I
Sbjct: 259 QMLQGPEGSAVELAI 273
>At4g17740.1 68417.m02648 C-terminal processing protease, putative
similar to C-terminal protease precursor [Spinacia
oleracea] GI:999435; similar to SP|Q44879| (Bartonella
bacilliformis)
Length = 515
Score = 39.9 bits (89), Expect = 0.005
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 561 GLGFSILDYQDPVDPNGTVIVVRSLVPGGVAEKNGEISPGDRVMSVNGVSIQNATLDQAV 620
G+G SI Y D +VV S PGG A + G I PGD + ++ + + T+ A
Sbjct: 211 GVGLSI-GYPTASDGPPAGLVVISAAPGGPANRAG-ILPGDVIQGIDNTTTETLTIYDAA 268
Query: 621 QALKGAPRGTVKVGI 635
Q L+G V++ I
Sbjct: 269 QMLQGPEGSAVELAI 283
>At1g15740.1 68414.m01888 leucine-rich repeat family protein
Length = 585
Score = 35.5 bits (78), Expect = 0.11
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 423 DGPVGLQGVLNAGDELLEVNEYRLHGLTHSEVVNILKQLPDRVRLVCARNSIDSGPRPVV 482
+G V L G+L L E +GL H ++ L+ + +V DSG R +
Sbjct: 373 EGLVHLSGMLELKSLELSDTEVGSNGLRHLSGLSNLESINLSFTVVT-----DSGLRKLS 427
Query: 483 NLASDRE-GFEARKIISGSLNNLTTLVKAQSDTSINTSSTATLTNHSEQSKKSRSLE-CV 540
L S R +AR + L+ LT+L T + TNH KK +SLE C
Sbjct: 428 GLTSLRTLNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICG 487
Query: 541 SGL 543
GL
Sbjct: 488 GGL 490
>At5g03050.1 68418.m00253 expressed protein
Length = 140
Score = 34.7 bits (76), Expect = 0.20
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 319 QLENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKEEI 378
++E SI +I + ES T S++LE G + +EL F+E L + ++ V+KW++EI
Sbjct: 53 EMELSIAQILDKIESFTQTVSNLLETG---KTMLKELSNEFEERLIMIHKEHVEKWQDEI 109
>At1g55480.1 68414.m06346 expressed protein
Length = 335
Score = 33.5 bits (73), Expect = 0.45
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 23 GFNLVGGRSTGVVIKYVLPGGVADKDRRLQSGDHVLQVGSV 63
G GR G I +LPGG ADK + GD V+ +V
Sbjct: 98 GLKFRKGRDGGTYIDAILPGGSADKTGKFTVGDRVIATSAV 138
Score = 31.1 bits (67), Expect = 2.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 224 GIFVKSIIEGSSAEQSGKIKINDRIIEVDGI 254
G ++ +I+ G SA+++GK + DR+I +
Sbjct: 108 GTYIDAILPGGSADKTGKFTVGDRVIATSAV 138
Score = 31.1 bits (67), Expect = 2.4
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 582 VRSLVPGGVAEKNGEISPGDRVMSVNGV 609
+ +++PGG A+K G+ + GDRV++ + V
Sbjct: 111 IDAILPGGSADKTGKFTVGDRVIATSAV 138
>At1g11510.1 68414.m01322 DNA-binding storekeeper protein-related
similar to storekeeper protein GI:14268476 [Solanum
tuberosum]
Length = 352
Score = 33.5 bits (73), Expect = 0.45
Identities = 51/238 (21%), Positives = 106/238 (44%), Gaps = 20/238 (8%)
Query: 321 ENSITEIEPEPESNTTIDS-SVLEVG-DLQEPTQEELDQRFDEILA--VDKEDIVK-KWK 375
E+ ++ P P TT+D+ S E G D + + EL+++ D+++ VD + K K
Sbjct: 33 EDDVSSENPSP-LKTTLDAVSDSESGSDEETDSDSELEKKKDQVVTNPVDVKRAKKVKTS 91
Query: 376 EEIGSDKEILVAE------IKKLEGLGISLEGTVDVEGGQELRPHHYIRSVLPDGP-VGL 428
E+ G+ + + V E +K+ + + E GG+E + ++ R D V L
Sbjct: 92 EKSGAKRSLEVDEAAVSMDVKRAKKVSGEEEKKKSGGGGEETKKTYFQRLWTEDDEIVVL 151
Query: 429 QGVLNAGDELLEVNEYRLHGLTHSEV-VNILK-QLPDRVRLVCAR--NSIDS---GPRPV 481
QG+++ + N +++ L + ++ K QL +++R + + N++ G P
Sbjct: 152 QGLIDDKKDTGVSNTNKVYELVKKSISFDVSKNQLMEKLRALKKKYENNLGKAKDGVEPT 211
Query: 482 VNLASDREGFEARKIISGSLNNLTTLVKAQSDTSINTSSTATLTNHSEQSKKSRSLEC 539
DR+ FE K++ G + ++ S +S ++ + + S + C
Sbjct: 212 FVKPHDRKAFELSKLVWGGIRMALASGMKSNEKSKKSSKFESVKHELDSSLPNSKNNC 269
>At3g09130.1 68416.m01074 hypothetical protein
Length = 397
Score = 32.3 bits (70), Expect = 1.0
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 348 QEPTQEELDQRFDEILAVDKEDIVKKWKEEIGSDKEILVAEIKKLEGLGISLEGTVDVEG 407
+E +L +D V K D+ KWKEE+ + E K ++ L + G + ++G
Sbjct: 110 EEMDTAKLAVGYDGETIVIKNDVDSKWKEELSKPLNLSETENKVIQRLLLISHGVIPLQG 169
Query: 408 -GQELRPHHY 416
HHY
Sbjct: 170 YSLVTTSHHY 179
>At3g57680.1 68416.m06426 peptidase S41 family protein similar to
PSII D1 protein processing enzyme (GI::7268527)
[Arabidopsis thaliana]; similar to SP|Q55669
Carboxyl-terminal processing protease precursor
(Photosystem II D1 protein processing peptidase) (EC
3.4.21.102) [strain PCC 6803] {Synechocystis sp.};
contains Pfam profile PF03572: Peptidase family S41B
Length = 516
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 574 DPNGTVIVVRSLVPGGVAEKNGEISPGDRVMSVNGVSIQNATLDQAVQALKG 625
+P +VV S V G A++ G I G+ ++ +NG + + + A Q L+G
Sbjct: 204 EPRTGHLVVMSCVEGSPADRAG-IHEGEELVEINGEKLDDVDSEAAAQKLRG 254
>At3g45770.2 68416.m04947 oxidoreductase, zinc-binding dehydrogenase
family protein similar to nuclear receptor binding
factor-1 NRBF-1 - Rattus norvegicus, EMBL:AB015724;
contains Pfam zinc-binding dehydrogenase domain PF00107
Length = 297
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 22 LGFNLVGGRSTGVVIKYVLPGG 43
LGFN VGG + +V+KY+ GG
Sbjct: 183 LGFNCVGGNAASLVLKYLREGG 204
>At3g45770.1 68416.m04948 oxidoreductase, zinc-binding dehydrogenase
family protein similar to nuclear receptor binding
factor-1 NRBF-1 - Rattus norvegicus, EMBL:AB015724;
contains Pfam zinc-binding dehydrogenase domain PF00107
Length = 375
Score = 31.1 bits (67), Expect = 2.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 22 LGFNLVGGRSTGVVIKYVLPGG 43
LGFN VGG + +V+KY+ GG
Sbjct: 261 LGFNCVGGNAASLVLKYLREGG 282
>At3g03380.1 68416.m00336 DegP protease, putative contains
similarity to degP GI:2623992 from [Bradyrhizobium
japonicum]
Length = 1097
Score = 30.7 bits (66), Expect = 3.2
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 566 ILDYQDPVDPNGTVIVVRSLVPGGVAEKNGEISPGDRVMSVNG 608
++ + P G ++VV S+VP G A+K+ + PGD ++ VNG
Sbjct: 291 VVRHASPTGETG-MLVVDSVVPSGPADKH--LEPGDVLVRVNG 330
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 30.3 bits (65), Expect = 4.2
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 319 QLENSITEIEPEPESNTT--IDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKE 376
Q+EN + + + E N T ++++ EV + + ++E + ++ V+ +D + KE
Sbjct: 208 QVENVEGKEKEDKEENKTKEVEAAKAEVDESKVEDEKEGSEDENDNEKVESKDAKEDEKE 267
Query: 377 EIGSDKEILVAEIK--KLEGLGISLEGTV-DVEGGQELRPHHYIRSVLPDGPV 426
E DKE E K K G G S G V + +E++ R+ D PV
Sbjct: 268 ETNDDKEDEKEESKGSKKRGKGTSSGGKVREKNKTEEVKKDAEPRTPFSDRPV 320
>At1g09000.1 68414.m01004 NPK1-related protein kinase, putative
(ANP1) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 1S GI:2342422
Length = 666
Score = 30.3 bits (65), Expect = 4.2
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 333 SNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKEEIGSDKEILVAEIKKL 392
S + + V + L T++EL Q V +I KKWKEE+ + E EI +
Sbjct: 587 SQDGVSARVTDWRGLVVDTKQELSQ------CVALSEIEKKWKEELDQELERKRQEIMRQ 640
Query: 393 EGLGIS 398
GLG S
Sbjct: 641 AGLGSS 646
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 29.9 bits (64), Expect = 5.6
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 323 SITEIEPEPESN----TTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKEEI 378
S +E EPEPE + + S++ + + EE+ ++L+VD DI++++ E
Sbjct: 170 SDSEEEPEPEEEKREFSEGEDSIIWLIGQEYGMGEEVQDALCQLLSVDASDILERYNELK 229
Query: 379 GSDKEILVAEIKKLEGLGISLE 400
DK+ LGISLE
Sbjct: 230 LKDKQNTEEFSNSGFKLGISLE 251
>At5g46390.2 68418.m05710 peptidase S41 family protein similar to
C-terminal peptidase of the D1 protein [Hordeum vulgare
subsp vulgare] GI:1296805; contains Pfam profiles
PF03572: Peptidase family S41B, PF00595: PDZ domain
(Also known as DHR or GLGF)
Length = 489
Score = 29.5 bits (63), Expect = 7.4
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 392 LEGLGISLEGTVDVEGGQELRPHHYIRSVLPDGPVGLQGVLNAGDELLEVNEYRLHGLTH 451
+ G+GI+L D G +L+ + ++ D + GV GDE+L VN + G +
Sbjct: 197 ITGIGINLREVSDGGGNVKLK----VLGLVLDSAADIAGV-KQGDEILAVNGMDVSGKSS 251
Query: 452 SEVVNILKQLPDRVRLVCARNSIDSGP 478
EV ++L Q P + +V GP
Sbjct: 252 FEVSSLL-QGPSKTFVVLKVKHGKCGP 277
>At5g46390.1 68418.m05709 peptidase S41 family protein similar to
C-terminal peptidase of the D1 protein [Hordeum vulgare
subsp vulgare] GI:1296805; contains Pfam profiles
PF03572: Peptidase family S41B, PF00595: PDZ domain
(Also known as DHR or GLGF)
Length = 428
Score = 29.5 bits (63), Expect = 7.4
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 392 LEGLGISLEGTVDVEGGQELRPHHYIRSVLPDGPVGLQGVLNAGDELLEVNEYRLHGLTH 451
+ G+GI+L D G +L+ + ++ D + GV GDE+L VN + G +
Sbjct: 197 ITGIGINLREVSDGGGNVKLK----VLGLVLDSAADIAGV-KQGDEILAVNGMDVSGKSS 251
Query: 452 SEVVNILKQLPDRVRLVCARNSIDSGP 478
EV ++L Q P + +V GP
Sbjct: 252 FEVSSLL-QGPSKTFVVLKVKHGKCGP 277
>At5g38500.1 68418.m04654 hypothetical protein contains Pfam profile
PF03754: Domain of unknown function (DUF313)
Length = 411
Score = 29.5 bits (63), Expect = 7.4
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 316 VPSQLENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQR--FDEILAVDKEDIVKK 373
VP + +S+ + + +P +T SS+ ++ + + E Q F E L D+E VKK
Sbjct: 60 VPRKKRSSLVKRQQKPNGVSTSSSSLPDLNQIPIDYETETKQNPSFIERLVCDEEQRVKK 119
Query: 374 WKEEIGSDKE 383
K I ++E
Sbjct: 120 GKSRIIWEEE 129
>At2g21970.1 68415.m02610 stress enhanced protein 2 (SEP2) nearly
identical to stress enhanced protein 2; SEP2
(GI:7384980) [Arabidopsis thaliana]
Length = 202
Score = 29.5 bits (63), Expect = 7.4
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 512 SDTSINTSSTATLTNHSEQSKKSRSLECVSG-LAM 545
SD + + TLT++ E SKKS+ E +SG LAM
Sbjct: 79 SDVELASPFFETLTDYIESSKKSQDFETISGRLAM 113
>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
domain-containing protein similar to SEX1 (starch
excess) [Arabidopsis thaliana] GI:12044358; contains
Pfam profile PF00686: Starch binding domain
Length = 1191
Score = 29.1 bits (62), Expect = 9.8
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 538 ECVSGLAMWQSKEDIVMLVKADQGLGFSILDYQDPVDPNGTVIVVRSLVPGGVAEKNG 595
E +G+ SK V+L LG D P +GT++ V S+VPG + +G
Sbjct: 660 EIRAGIIFQISKLCTVLLKAVRNSLGSEGWDVVVPGSTSGTLVQVESIVPGSLPATSG 717
>At5g04990.1 68418.m00528 sad1/unc-84 protein-related contains weak
similarity to Sad1/unc-84 protein-like 1
(Swiss-Prot:O94901) [Homo sapiens]
Length = 471
Score = 29.1 bits (62), Expect = 9.8
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 337 IDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKEEIGSDKEILVAEIKKLEGLG 396
++S + EV L + T + + E+L E K ++EI +E+KK+E
Sbjct: 154 LESRIAEVDGLVKATTNSMQVQV-ELLDKKMEREAKVLRQEIERKASAFQSELKKIESRT 212
Query: 397 ISLEGTVD 404
SLE +VD
Sbjct: 213 ESLEKSVD 220
>At4g01400.1 68417.m00180 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1117
Score = 29.1 bits (62), Expect = 9.8
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 319 QLENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILA 364
++E TE+ P P I S + E+G+L ++ L+ ++++A
Sbjct: 901 EIEEQCTEVFPAPADRERIKSCLSELGELSSTFKQLLNSGMEQLVA 946
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 29.1 bits (62), Expect = 9.8
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 316 VPSQLENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWK 375
V +LE E++ N ++ ++E+ E + +EL++ +L+++KE VK +
Sbjct: 520 VKDELEGVTHELKESSVKNQSLQKELVEIYKKVETSNKELEEEKKTVLSLNKE--VKGME 577
Query: 376 EEIGSDKE 383
++I ++E
Sbjct: 578 KQILMERE 585
>At2g46700.1 68415.m05827 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase homolog MCK1 [Zea mays]
gi|1839597|gb|AAB47181
Length = 595
Score = 29.1 bits (62), Expect = 9.8
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 134 LSQCYSDYNINGQNGETETSIVAAAVSVIGDNPQKIPDHPI 174
+ QCY N + QNGE E + VS GD Q P P+
Sbjct: 1 MGQCYGKVNQSKQNGEEEANTTTYVVS--GDGNQIQPLTPV 39
>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain; ESTs gb|T44428 and gb|AA395440 come from this
gene
Length = 1218
Score = 29.1 bits (62), Expect = 9.8
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 315 PVPSQLENSITEIEP-EPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKK 373
P P L S ++P +P+ + L V L + Q+ L+ +F+E AVDK+ V +
Sbjct: 554 PRPVPLSPSDGMVQPTQPKRKMPVLEKPL-VDQLSKEEQDSLNTKFEEATAVDKK--VDE 610
Query: 374 WKEEIGSDKE 383
++EI K+
Sbjct: 611 LEKEIADSKQ 620
>At1g09300.1 68414.m01041 metallopeptidase M24 family protein
similar to SP|P15034 Xaa-Pro aminopeptidase (EC
3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II)
(Aminoacylproline aminopeptidase) {Escherichia coli};
contains Pfam profiles PF00557: metallopeptidase family
M24, PF05195: Aminopeptidase P, N-terminal domain
Length = 493
Score = 29.1 bits (62), Expect = 9.8
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 8 AQVEVVELTNDGNGLGFN-LVGGRSTGVVIKYVLPGGVADKDRRLQSGDHVLQVGSVNLR 66
AQVE + FN +VGG S VI Y + D+R++ GD VL L
Sbjct: 249 AQVEYECRVRGAQRMAFNPVVGGGSNASVIHY------SRNDQRIKDGDLVLMDMGCELH 302
Query: 67 GFTSE 71
G+ S+
Sbjct: 303 GYVSD 307
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.133 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,853
Number of Sequences: 28952
Number of extensions: 668933
Number of successful extensions: 1529
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1517
Number of HSP's gapped (non-prelim): 32
length of query: 657
length of database: 12,070,560
effective HSP length: 86
effective length of query: 571
effective length of database: 9,580,688
effective search space: 5470572848
effective search space used: 5470572848
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -