GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000812-TA|BGIBMGA000812-PA|IPR001478|PDZ/DHR/GLGF
         (657 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   2.2  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   2.2  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   3.8  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   3.8  
AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esteras...    23   6.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   6.7  
AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esteras...    23   8.8  
AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esteras...    23   8.8  
AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esteras...    23   8.8  
AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esteras...    23   8.8  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 324 ITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKE 368
           ITE+EPE   +    + +   G +   T EE+ +    +  +D++
Sbjct: 518 ITELEPETIESQDAITRIYACGTMWHETPEEMMEFLKSVFRLDQD 562


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 324 ITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKE 368
           ITE+EPE   +    + +   G +   T EE+ +    +  +D++
Sbjct: 518 ITELEPETIESQDAITRIYACGTMWHETPEEMMEFLKSVFRLDQD 562


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 500 SLNNLTTLVKAQS--DTSINTSSTATLTNHSEQSKKSRSLECVSGLAMWQS 548
           SL+    +V A+S  DTSI T+ +      S  ++K  SL+ +   A W +
Sbjct: 265 SLSRWIKMVLAESGVDTSIYTAHSTRHAATSAAARKGISLDLIRKTAGWSA 315


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 324 ITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKE 368
           ITE+EPE   +    + +  +  +   T EE+ +    +  +D++
Sbjct: 285 ITELEPETIESQDAITRIYAIATMWHETPEEMMEFLKSVFRLDQD 329


>AJ850290-1|CAH64510.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 1   MVLSTEWAQVEVVELTNDGNGLGFNLVGGRSTGVVIKYVL 40
           MVL+ +W Q  ++    D N +    + G S G    + L
Sbjct: 165 MVLALKWVQENIIHFCGDPNNV---TIFGESAGAAAAHYL 201


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 608 GVSIQNATLDQAVQALKGAPRGTVKVGIARPLPPQDS 644
           G + + A L  A +A   +P       +  P PPQDS
Sbjct: 293 GKAQEEANLYAAKKAAGASPYSGTPTPMMSPAPPQDS 329


>AJ850291-1|CAH64511.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 1   MVLSTEWAQVEVVELTNDGNGLGFNLVGGRSTGVVIKYVL 40
           MV++ +W Q  V+    D N +    + G S G    + L
Sbjct: 165 MVMALKWVQENVIHFCGDPNNV---TIFGESAGAAAAHYL 201


>AJ850289-1|CAH64509.1|  533|Tribolium castaneum putative esterase
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 1   MVLSTEWAQVEVVELTNDGNGLGFNLVGGRSTGVVIKYVL 40
           MV++ +W Q  V+    D N +    + G S G    + L
Sbjct: 165 MVMALKWVQENVIHFCGDPNNV---TIFGESAGAAAAHYL 201


>AJ850288-1|CAH64508.1|  510|Tribolium castaneum putative esterase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 1   MVLSTEWAQVEVVELTNDGNGLGFNLVGGRSTGVVIKYVL 40
           MVL  +W Q  ++    D N +    + G S G    + L
Sbjct: 165 MVLDLKWVQENIIHFCGDPNNV---TIFGESAGAAAAHYL 201


>AJ850287-1|CAH64507.1|  509|Tribolium castaneum putative esterase
           protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 1   MVLSTEWAQVEVVELTNDGNGLGFNLVGGRSTGVVIKYVL 40
           MV++ +W Q  V+    D N +    + G S G    + L
Sbjct: 164 MVMALKWVQENVIHFCGDPNNV---TIFGESAGAAAAHYL 200


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.133    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,297
Number of Sequences: 317
Number of extensions: 5959
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 10
length of query: 657
length of database: 114,650
effective HSP length: 61
effective length of query: 596
effective length of database: 95,313
effective search space: 56806548
effective search space used: 56806548
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)