GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000812-TA|BGIBMGA000812-PA|IPR001478|PDZ/DHR/GLGF
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    32   0.29 
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   2.0  
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch...    29   2.7  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   2.7  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    29   2.7  
SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr...    29   2.7  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    28   3.6  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    28   4.7  

>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 19/48 (39%), Positives = 24/48 (50%)

Query: 478 PRPVVNLASDREGFEARKIISGSLNNLTTLVKAQSDTSINTSSTATLT 525
           P  + N  SD EG   RK+   S+ +  T V A S  S+ T ST T T
Sbjct: 507 PSELCNKFSDGEGLPNRKVSKLSVESDETAVSASSGESVPTDSTLTDT 554


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 582 VRSLVPGGVAEKNGEISPGDRVMSVN 607
           V  + PG  AE NGE+SP  R+   N
Sbjct: 177 VAGMSPGATAELNGEVSPDRRLFEYN 202


>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 161

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 4/101 (3%)

Query: 321 ENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEI-LAVDKEDIVKKWKEEIG 379
           E  + E+E +         S+    +  E   EEL++   ++ L  D EDI K   E++ 
Sbjct: 26  EAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDIQKTEAEQLS 85

Query: 380 SDKEILVAEIKKLEGLGISLEGTVDVEGGQELRPHHYIRSV 420
              E+L  E++  + L   L  T +     +++  H+ R V
Sbjct: 86  RKVELLEEELETNDKL---LRETTEKMRQTDVKAEHFERRV 123


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 322 NSITEIEPEPESNTTI--DSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKEEIG 379
           + +TE+  E E N  I  D S+ E   + +  Q E     DE+    ++DI K   E+I 
Sbjct: 874 DKVTELIDEAEENIDISQDISMTETNAVDDEVQAENSILQDEVEETRQDDIEKDELEDIK 933

Query: 380 SDKE 383
             KE
Sbjct: 934 EVKE 937


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 10/82 (12%)

Query: 372 KKWKEEIGSDKEILVAEIKKLEGLGISLEG-TVDVEGGQELRPHHYIRSVLPDGPVGLQG 430
           K++KE+ G + E  + E  K E  GI   G + D E  + LR H        DGP+ L+G
Sbjct: 227 KQFKEKHGVEVEENMLEAAK-EFAGIVFPGISHDWEDLKFLRKHW-------DGPIVLKG 278

Query: 431 VLNAGDELLEVNEYRLHGLTHS 452
           ++N  D    V EY + G+  S
Sbjct: 279 IMNVPDAKKAV-EYGMQGIVVS 299


>SPBP8B7.05c |||carbonic anhydrase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 160 SVIGDNPQKIPDHPI--VCDSVSPTITITVPVELPEIEIIHV-DLNKNVYGLGITVAGYV 216
           + +G N   + DH +  + D +         +E P++  + + +LN     + +T  G+V
Sbjct: 143 AALGPNLNNLLDHWLRHIRDVIEDNREELDAIEDPQLRRLKLAELNTRAQAISVTRVGFV 202

Query: 217 CEKEELSGIFVKSIIEGSSAEQSGKIKINDRI 248
            E  E  G+ V   I   S  Q  K+ I D I
Sbjct: 203 REAMEKRGLQVHGWIYDLSNGQIKKLDITDAI 234


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 47  KDRRLQSGDHVLQVGSVNLRGFTSEQVAAVLRQAGPVVRLLVAR 90
           +++ LQ    VL VG +   GF  +Q+     Q GPV+RL ++R
Sbjct: 96  ENKNLQKKKGVLYVGRLP-HGFYEKQMRMYFSQFGPVLRLRMSR 138


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 493 ARKIISGSLNNLTTLVKAQSDTSINTSSTATLTNHSEQSKKSRSLECVSGLA-MWQSKED 551
           ARK   GSL +   +++ +S + + T S  T      Q  +S S   VS L+ +   K D
Sbjct: 399 ARKSTDGSLGSRVKVLREESQSFVPTKSAVTEQVEPIQLIRSLSANTVSRLSKVGNMKSD 458

Query: 552 IVMLVK 557
           I + VK
Sbjct: 459 IWISVK 464


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.133    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,201
Number of Sequences: 5004
Number of extensions: 123022
Number of successful extensions: 283
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 10
length of query: 657
length of database: 2,362,478
effective HSP length: 77
effective length of query: 580
effective length of database: 1,977,170
effective search space: 1146758600
effective search space used: 1146758600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)