Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000812-TA|BGIBMGA000812-PA|IPR001478|PDZ/DHR/GLGF
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0135 + 12188739-12189086,12189191-12189272,12189397-121895... 36 0.13
07_01_0509 + 3792255-3792661,3792745-3792851,3792949-3793043,379... 34 0.41
10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190 33 0.95
10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556 32 1.3
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 32 1.7
04_03_0937 + 20923705-20923833,20924001-20924012,20924413-209244... 32 1.7
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 31 2.2
01_01_0473 - 3478660-3480338,3480507-3480609 31 2.2
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 31 2.9
12_01_1055 - 10861665-10861829,10862827-10863171,10864374-108646... 31 2.9
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 31 2.9
10_08_0757 + 20367348-20367560,20367657-20367904,20371406-203717... 31 2.9
06_03_1043 - 27097094-27097735 31 2.9
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 31 2.9
05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004 31 3.8
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 31 3.8
01_06_0161 + 27108920-27109279,27109479-27109598,27110301-271104... 30 5.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 6.7
09_04_0636 + 19150966-19151037,19151150-19151291,19151404-191514... 29 8.9
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 29 8.9
>06_02_0135 +
12188739-12189086,12189191-12189272,12189397-12189527,
12189626-12189712,12189794-12189872,12190520-12190608,
12190765-12190806,12191030-12191149,12191819-12191968,
12192066-12192137,12192293-12192541
Length = 482
Score = 35.5 bits (78), Expect = 0.13
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 574 DPNGTVIVVRSLVPGGVAEKNGEISPGDRVMSVNGVSIQNATLDQAVQALKGAPRGTVKV 633
+P+ ++V + GG A++ G + GD ++ ++G S+ + A Q L+G TVKV
Sbjct: 210 EPSSGRLLVMDCIEGGPADRAG-LHGGDELVEIDGKSVSGLDGEAAAQRLRGRVGTTVKV 268
Query: 634 GI 635
+
Sbjct: 269 KV 270
>07_01_0509 +
3792255-3792661,3792745-3792851,3792949-3793043,
3793169-3793245,3793334-3793454,3793533-3793592,
3793672-3793812
Length = 335
Score = 33.9 bits (74), Expect = 0.41
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 23 GFNLVGGRSTGVVIKYVLPGGVADKDRRLQSGDHVLQVGSV 63
G GR G I+ +LPG AD+ + + GD VL +V
Sbjct: 98 GLKFAKGRDGGTYIEAILPGAAADQTGKFEVGDKVLATSAV 138
Score = 32.3 bits (70), Expect = 1.3
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 9/105 (8%)
Query: 506 TLVKAQSDT-SINTSSTATLTNHSEQSKKSRSLECVSGLAMWQSKEDIVMLVKADQGLGF 564
TL++A+ T ++ +S+++ ++ S+ KS E + Q E+ + + GL F
Sbjct: 42 TLLRAERRTLAVARASSSSSSSSSQTEPKSEGGEAAAAEGEEQPYEEYEVEILKPYGLKF 101
Query: 565 SILDYQDPVDPNGTVIVVRSLVPGGVAEKNGEISPGDRVMSVNGV 609
+ +D GT I +++PG A++ G+ GD+V++ + V
Sbjct: 102 A--KGRD----GGTYI--EAILPGAAADQTGKFEVGDKVLATSAV 138
Score = 31.5 bits (68), Expect = 2.2
Identities = 8/31 (25%), Positives = 23/31 (74%)
Query: 224 GIFVKSIIEGSSAEQSGKIKINDRIIEVDGI 254
G ++++I+ G++A+Q+GK ++ D+++ +
Sbjct: 108 GTYIEAILPGAAADQTGKFEVGDKVLATSAV 138
>10_01_0299 - 3101028-3102022,3103004-3103177,3105272-3106190
Length = 695
Score = 32.7 bits (71), Expect = 0.95
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 198 HVDLNKNVYGLGITVAGYVCEKEELSGIFVKSIIEGSSA---EQSGKIKINDRIIEVDGI 254
H+ +VY G+ + +C K + G IIE +A E SG+I + I + + I
Sbjct: 595 HLTQKSDVYSFGVVLLELICRKPTIYGENCSLIIEFQNAYDQENSGRIMFDKEIAKQEDI 654
Query: 255 SLADKSNPQSVEILR 269
+ ++ ++E L+
Sbjct: 655 LILEEIGRLAMECLK 669
>10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556
Length = 693
Score = 32.3 bits (70), Expect = 1.3
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 198 HVDLNKNVYGLGITVAGYVCEKEELSGIFVKSIIEGSSA---EQSGKIKINDRIIEVDGI 254
H+ +VY G+ + +C K + G IIE +A E SG+I + I + I
Sbjct: 593 HLTQKSDVYSFGVVLLELICRKPTIYGENCSLIIEFQNAYDQENSGRIMFDKEIANEEDI 652
Query: 255 SLADKSNPQSVEILR 269
+ ++ ++E L+
Sbjct: 653 LILEEIGRLAMECLK 667
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 31.9 bits (69), Expect = 1.7
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 18/122 (14%)
Query: 494 RKIISGSLNNLTTLVKAQSDTSINTSSTATLTNHSEQSKKSRSLECVSGLAMWQSKEDIV 553
RK++ S + +T + D I++ S + NH + KSRS C + ++ D +
Sbjct: 299 RKVVDNS-TSFSTSLGDHPDCGIDSDSHGYVQNHDKDGTKSRS-RCSTAKKLF---ADTI 353
Query: 554 MLVKADQGLGFSILDYQDPVDPNGTVIVVRSLVPGGVAEKNGEISPGDRVMSVNGVSIQN 613
+ + G F+ L Y + S PG +++ N + DR++S++G+S Q
Sbjct: 354 VKESENNGRCFAGLSY------------IESQEPGDLSQANA-LELVDRLISISGMSSQE 400
Query: 614 AT 615
T
Sbjct: 401 PT 402
>04_03_0937 +
20923705-20923833,20924001-20924012,20924413-20924473,
20924523-20924749,20924859-20925104,20925645-20925657,
20927681-20928302,20928320-20928949,20928960-20929224
Length = 734
Score = 31.9 bits (69), Expect = 1.7
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 450 THSEVVNILKQLPDRVRLVCARNSIDSGPRPVVNLASDREGFE 492
T + V++ +PD VRL C +++ +G R + L SD+ FE
Sbjct: 377 TATAAVDVSHHVPDDVRLACTCDAVAAGNRLYLLLLSDQSHFE 419
>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 31.5 bits (68), Expect = 2.2
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 325 TEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDE-ILAVDKEDIVKKWKE 376
T IEP+ ES + + V E GDL + +++ DE +L ++ED+ K+ +E
Sbjct: 1903 TSIEPQLESVSLENGPVEEAGDLADVSKQTDSNTEDEKLLCTEEEDLSKEAEE 1955
>01_01_0473 - 3478660-3480338,3480507-3480609
Length = 593
Score = 31.5 bits (68), Expect = 2.2
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 316 VPSQLENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWK 375
V +LE S TE+ E TI++ ++G E + +L+ R +++ E +
Sbjct: 355 VRKELEGSRTEVA---ELQATINNLKADLGRALEE-KSQLESRINDL-----EHTIACNL 405
Query: 376 EEIGSDKEILVAEIKKLEGLGISLEG 401
EE +K L AEI+KL+ SLEG
Sbjct: 406 EEFSQEKSSLGAEIQKLKEANASLEG 431
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 31.1 bits (67), Expect = 2.9
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 339 SSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKEEIGSDKEILVAEIKK 391
S L+ +E +EE ++ ++ LA+ +E+ +K KEE KE ++A+ ++
Sbjct: 406 SEELKENTFREEDEEEYQEKIEQQLAMQEEEDPEKIKEEARRRKEAIMAKYRQ 458
>12_01_1055 -
10861665-10861829,10862827-10863171,10864374-10864682,
10864813-10864968,10865669-10866117,10869275-10869359,
10869944-10870300,10870672-10871076
Length = 756
Score = 31.1 bits (67), Expect = 2.9
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 323 SITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWKEEIGSDK 382
S+T + P S+ + + L V LQE E + + + I+ + ++ + K +
Sbjct: 185 SLTSNDFSPMSDVLLSTEKLRVRLLQEGLNETVVKECESIMMTELLELHNQMKSQ-QQQY 243
Query: 383 EILVAEIKKLEGLGISLEGTVDVEGGQELRPHHY 416
IL+ +++LE + LE TV V +E H Y
Sbjct: 244 SILIDRLRQLETEKVELERTV-VHETKEREAHGY 276
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 591 AEKNGEISPGDRVMSVNGVSIQNATLDQAVQALKGAPRGTVKVGIARPLPPQDSSKSKGT 650
A+++ E+S G V S + I +L + G G+V V +A L P++ + G
Sbjct: 173 AQRSFEVSIGSNVFS--DIEISMPSLPSKIDQFIGGNDGSVLVSMASALVPKEVTDMSGC 230
Query: 651 INVNKAS 657
IN+ A+
Sbjct: 231 INIFHAT 237
>10_08_0757 +
20367348-20367560,20367657-20367904,20371406-20371730,
20372299-20372541
Length = 342
Score = 31.1 bits (67), Expect = 2.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 431 VLNAGDELLEVNEYRLHGLTHSEVVNILKQLPDRVRLVCARNSIDSGP 478
V+N GD+L ++ + + H VVN ++ +C NS++ GP
Sbjct: 254 VINIGDQLQALSNGKYRSVWHRAVVNSDRERMSVASFLCPCNSVELGP 301
>06_03_1043 - 27097094-27097735
Length = 213
Score = 31.1 bits (67), Expect = 2.9
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 62 SVNLRGFTSEQVA-AVLRQAGPVVRLLVARPADPATALRAPQPGTALVPTKILA 114
S L F S+ L A P+ RLL A P P L +P G A PT I+A
Sbjct: 103 SAGLLAFLSDASGHKTLLLANPITRLLAALPISPTPRL-SPTVGLAAGPTSIIA 155
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 67 GFTSEQVAAVLRQAGPVVRLLVARPADPATALRAPQPGTALVPTKILADPELLDRHLIET 126
GFT E+V++V+ +AGP +L + A + A + +++ ++ +P+ LD ET
Sbjct: 639 GFTEEEVSSVIDKAGPEATVL-----ELADTIFARRIASSIEQKEVKVEPDFLDE--TET 691
Query: 127 GYGAVY 132
Y A +
Sbjct: 692 SYSAYH 697
>05_05_0228 + 23454434-23455456,23456151-23456555,23456657-23457004
Length = 591
Score = 30.7 bits (66), Expect = 3.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 92 ADPATALRAPQPGTALVPTKILADPEL-LDRHLIETGYGAVYDLSQCYS 139
ADP++ L+AP PG +P +LA L ++ +GA+ L + S
Sbjct: 125 ADPSSTLQAPGPGGGAIPEDLLAALHLDASNPVVRAAWGALSRLDELTS 173
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 30.7 bits (66), Expect = 3.8
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 316 VPSQLENSITEIEPEPES-NTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKW 374
V ++E EIE E E + + EV + Q+ EE+ + ++ K I +
Sbjct: 74 VEEEIEEEEEEIEEEEEEVREEVQEAGEEVDEEQQGANEEMQKSKEDADESSKSAIPVQK 133
Query: 375 KEEIGSDKEILVAEIKKLEG-------LGISLEGTVDVEGGQEL 411
+EE ++KEI+ A+ ++ G I G VD +G Q++
Sbjct: 134 QEEDEAEKEIIEAKDEEQHGDKLASQEHDIGENGDVDAQGVQQV 177
>01_06_0161 +
27108920-27109279,27109479-27109598,27110301-27110438,
27110680-27110784,27110883-27111051,27111507-27111583,
27111796-27111840,27111984-27112022,27112374-27112457,
27112846-27112884,27112963-27113025,27113109-27113238,
27113319-27113374
Length = 474
Score = 30.3 bits (65), Expect = 5.1
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 567 LDYQDPVDPNGTV-IVVRSLVPGGVAEKNGEISPGDRVMSVNGVSIQNATLDQAVQALKG 625
L+ ++ D NG+ ++V L+ G A G + GD ++SVNG+ + + L+G
Sbjct: 174 LNLREIPDGNGSSKLMVLGLILDGPAHSAG-VRQGDELLSVNGIDVMGKSAFDVSSMLQG 232
Query: 626 APRGT-----VKVGIARPLPP 641
P+ T VK G P+ P
Sbjct: 233 -PKDTFVTIKVKHGNCGPVEP 252
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 6.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 316 VPSQLENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEE 354
V L + +T+ EPE T D+ V + +++E T+EE
Sbjct: 2014 VTEMLNDEVTQHEPEDSIPRTTDAMVENITEIKEETEEE 2052
>09_04_0636 +
19150966-19151037,19151150-19151291,19151404-19151492,
19151589-19152308
Length = 340
Score = 29.5 bits (63), Expect = 8.9
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 26 LVGGRSTGVVIKYVLPGGVADKDRRLQSGDHVLQVGSVNLRGFTSEQVAAVLRQAGPVVR 85
LVGG V+ Y P G A + + D V+ +V G A VL AG VV
Sbjct: 199 LVGGLGADKVLDYATPEGAALRSPSGRRYDAVVHCAAV--AGLPWSAFAPVLADAGVVVD 256
Query: 86 LLVARPADPATALR 99
L A ATALR
Sbjct: 257 LTPGAAAF-ATALR 269
>03_06_0448 -
34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 29.5 bits (63), Expect = 8.9
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 316 VPSQLENSITEIEPEPESNTTIDSSVLEVGDLQEPTQEELDQRFDEILAVDKEDIVKKWK 375
V S+ E T + E N ++D S+ +E T L+ + L+VD+ V
Sbjct: 696 VSSEPEGGATAMPEEKMLNVSVDMSLDATDRPEEGTTIMLELENEANLSVDESCRVSNSP 755
Query: 376 EE----IGSDKEILVAEIKKLEGLGIS 398
EE +G DKE VA + EG G S
Sbjct: 756 EEVSATVGGDKEEKVAIDEADEGNGTS 782
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.133 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,115,417
Number of Sequences: 37544
Number of extensions: 836834
Number of successful extensions: 1878
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1864
Number of HSP's gapped (non-prelim): 28
length of query: 657
length of database: 14,793,348
effective HSP length: 87
effective length of query: 570
effective length of database: 11,527,020
effective search space: 6570401400
effective search space used: 6570401400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -