GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000812-TA|BGIBMGA000812-PA|IPR001478|PDZ/DHR/GLGF
         (657 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   4.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   7.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 138 YSDYNINGQNGETETSIVAAAVSVIGDNPQKI 169
           Y +YNING N + +  +   ++S +  +  KI
Sbjct: 223 YGNYNINGFNFQWKDGLFGLSLSALQTDGYKI 254


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 471 RNSIDSGPRPVVNLASDREGFEARKIISGSLNNLTTLVKAQS-DTSINTS 519
           R + ++    ++N A D+ G  A+K ++   NNL  +V + S  ++IN S
Sbjct: 195 RQTFENQVNRILNDARDKTGGSAKKSLT-EYNNLKAMVVSGSKGSNINIS 243


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.133    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,658
Number of Sequences: 429
Number of extensions: 7541
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 657
length of database: 140,377
effective HSP length: 62
effective length of query: 595
effective length of database: 113,779
effective search space: 67698505
effective search space used: 67698505
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)