Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000811-TA|BGIBMGA000811-PA|undefined
         (59 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    19   3.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    19   3.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           19   5.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    19   5.2  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)

Query: 2   PPTPEAIDDHN 12
           PP PE  DD N
Sbjct: 215 PPPPEEDDDSN 225


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 5/16 (31%), Positives = 12/16 (75%)

Query: 27  RVSSVTLLTCPISHVF 42
           + +S +L+  P++H+F
Sbjct: 152 KTTSKSLVPTPVTHIF 167


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 38  ISHVFPFVERDNRQTTPI 55
           +SH   +V+  N  TTP+
Sbjct: 243 LSHFAYYVDMANMLTTPL 260


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 2   PPTPEAIDDHNHS 14
           PP  E IDD+  S
Sbjct: 90  PPPDEPIDDYEPS 102



 Score = 18.2 bits (35), Expect = 6.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 38   ISHVFPFVERDN 49
            I+HV  F+E +N
Sbjct: 1925 IAHVVDFIETNN 1936


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,585
Number of Sequences: 317
Number of extensions: 425
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 59
length of database: 114,650
effective HSP length: 39
effective length of query: 20
effective length of database: 102,287
effective search space:  2045740
effective search space used:  2045740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.4 bits)
S2: 34 (17.8 bits)