Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000811-TA|BGIBMGA000811-PA|undefined
         (59 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    25   1.2  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    24   2.1  
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S...    23   3.6  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    23   3.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   3.6  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    22   8.4  
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ...    22   8.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    22   8.4  

>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 3   PTPEAIDDHNHSVKSYTDKAEAVGRV 28
           P P  ID+  H+VK Y + A  +  V
Sbjct: 108 PDPALIDNLEHNVKQYAEIASKISAV 133


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 28  VSSVTLLTCPISHVFPFVE 46
           ++ + LLT P SH  P +E
Sbjct: 123 IAQILLLTLPFSHALPLME 141


>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
          Alg14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 7  AIDDHNHSVKSYTDKAEAVGRVSSVTLLT 35
          A+DD  +SV+SY   ++    VS  +LL+
Sbjct: 56 ALDDKLYSVRSYVAGSDDTMSVSKASLLS 84


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 3   PTPEAIDDHN-HSVKSYTDKAEAVGRVSSVTL 33
           P P  I + N H+V++  D+A  V R SS+ +
Sbjct: 70  PGPVQISEGNDHTVETKIDEAAVVHRSSSIVI 101


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 8   IDDHNHSVKSYTDKAEAVGRVSSVTLLTCP 37
           I +  H + S  +KAE V   S +T    P
Sbjct: 863 ISNQTHEINSVENKAETVSNNSKITNFDIP 892


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 14  SVKSYTDKAEAVGRVSSVTLLT 35
           SVK+  ++    GR++SVTL T
Sbjct: 570 SVKTVDERKSLDGRITSVTLET 591


>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
          Ade6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 552

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 3  PTPEAIDDHNHSVKSYTDKAEAVGRVSSVTLLTCPISHV 41
          P  +      H   S+TD    V      TLLT  I H+
Sbjct: 39 PAKQIDGGREHIDASFTDPDAIVELSKKCTLLTTEIEHI 77


>SPCC18B5.03 |wee1||dual specificity protein kinase
          Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 2  PPTPEAIDDHNHSVKS 17
          PPTP ++ D N+S  S
Sbjct: 32 PPTPSSLYDANNSTSS 47


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 293,452
Number of Sequences: 5004
Number of extensions: 8699
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 8
length of query: 59
length of database: 2,362,478
effective HSP length: 40
effective length of query: 19
effective length of database: 2,162,318
effective search space: 41084042
effective search space used: 41084042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)