Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000811-TA|BGIBMGA000811-PA|undefined
         (59 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   2.9  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          26   5.1  
SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.1  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                25   6.7  
SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.9  
SB_18146| Best HMM Match : Pkinase (HMM E-Value=0)                     25   8.9  

>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 15  VKSYTDKAEAVGRVSSVTLLTCPISHVFPFVERDNRQTTPIKINL 59
           + S   KA  +G +SS +L T   +H F  V+ +     PI I L
Sbjct: 235 IYSILRKARLLGSLSSSSLFTVSSNHAFVHVQPNTASFDPINILL 279


>SB_48122| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1589

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 3   PTPEAIDDHNHSVKSYTDKAEAVGRVSSVTLLTC 36
           P  +  D + + V  YT + +A    S+VTL+ C
Sbjct: 467 PDSDISDLYRYEVTVYTGRGKAAATTSNVTLIMC 500


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 10  DHNHSVKSYTDKAEAVGRVSSV 31
           DH  SV++ TDKA+ V R+ ++
Sbjct: 188 DHYSSVEANTDKAKEVSRIRNI 209


>SB_14898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 649

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 14  SVKSYTDKAEAVGRVSSVTLLTCPISHVFPFVERDNRQTTPIKI 57
           SV   + K  A+ R ++  L + P   V     ++NR  TP K+
Sbjct: 139 SVPEDSQKLVAIVRTTATVLFSRPSKPVVLLPAKENRDATPTKV 182


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 2    PPTPEAIDDHNH--SVKSYTD 20
            PP P  +DDH H  SV S+ D
Sbjct: 1543 PPAPSHMDDHTHPTSVPSHMD 1563


>SB_28525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 2   PPTPEAIDDHNH--SVKSYTD 20
           PP P  +DDH H  SV S+ D
Sbjct: 215 PPAPSHMDDHTHPTSVPSHMD 235


>SB_22843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 27  RVSSVTLLTCPISHVFPFVERDNRQTTPIK 56
           ++S   LL C  S +   +E+D R+  PIK
Sbjct: 821 QLSKEALLGCCQSKLITHIEKDQRRAMPIK 850


>SB_18146| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 888

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 27  RVSSVTLLTCPISHVFPFVERDNRQTTPIK 56
           ++S   LL C  S +   +E+D R+  PIK
Sbjct: 821 QLSKEALLGCCQSKLITHIEKDQRRAMPIK 850


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,826
Number of Sequences: 59808
Number of extensions: 60875
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 8
length of query: 59
length of database: 16,821,457
effective HSP length: 38
effective length of query: 21
effective length of database: 14,548,753
effective search space: 305523813
effective search space used: 305523813
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)