GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000811-TA|BGIBMGA000811-PA|undefined
         (59 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0354 + 2804640-2804703,2804911-2806451                           25   5.9  
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733           25   7.7  

>01_01_0354 + 2804640-2804703,2804911-2806451
          Length = 534

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 8   IDDHNHSVKSYTDKAEAVGRVSSVTLL 34
           +  +NH  ++YT+  + +GR+  V L+
Sbjct: 139 LPQYNHGSRAYTEMLDILGRMKKVRLM 165


>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
          Length = 181

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 2   PPTPEAIDDHNHSVKSYTDKAEAVGRVSSVTLLTCPISHVF 42
           P  P A    ++   S T+  +A   ++SV + TC + +VF
Sbjct: 141 PSPPPAGSAGSNKTSSATNSKKAASLMASVLIPTCALFYVF 181


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,868,396
Number of Sequences: 37544
Number of extensions: 50299
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111
Number of HSP's gapped (non-prelim): 2
length of query: 59
length of database: 14,793,348
effective HSP length: 39
effective length of query: 20
effective length of database: 13,329,132
effective search space: 266582640
effective search space used: 266582640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)