GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000811-TA|BGIBMGA000811-PA|undefined
         (59 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical ...    25   4.8  
Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical pr...    25   6.3  
AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical ...    25   6.3  

>AC087794-2|AAG53703.2|  840|Caenorhabditis elegans Hypothetical
           protein Y32G9A.6 protein.
          Length = 840

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 8   IDDHNHSVKSYTDKAEAVGRVSSVTLLTCPISHVFPFVERDNRQTTPIKI 57
           +D  NH+ ++    A +VG +  V LL      V P   R+    TP+ +
Sbjct: 337 LDIPNHNGRTAIHLAASVGNLEMVILLCTKKCFVDPLCSREKEIFTPLDL 386


>Z68879-2|CAA93083.1|  182|Caenorhabditis elegans Hypothetical
           protein K08F4.3 protein.
          Length = 182

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 1   MPPTPEAIDDHNHSVKSYTDKAEAV-GRVSSVTLLTCPISHVF 42
           +P  P+AI+DH+ +V +YTD       R S+V+      +H F
Sbjct: 94  IPRVPQAIEDHDVTV-NYTDSETGKRARTSTVSYDKRGYTHFF 135


>AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical
          protein Y67D2.7 protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 2  PPTPEAIDDHNHSVKSYTDKAEAVGRVSSVTLL 34
          PP P+ +DDH+ S  ++      +   +S T L
Sbjct: 59 PPAPKRLDDHSPSPAAFRTPVIGMPHAASTTSL 91


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,645,719
Number of Sequences: 27539
Number of extensions: 46406
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 3
length of query: 59
length of database: 12,573,161
effective HSP length: 40
effective length of query: 19
effective length of database: 11,471,601
effective search space: 217960419
effective search space used: 217960419
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)