GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000811-TA|BGIBMGA000811-PA|undefined
         (59 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) fa...    28   0.68 
At1g17940.1 68414.m02220 expressed protein                             28   0.90 
At1g16270.1 68414.m01948 protein kinase family protein contains ...    27   1.6  
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    25   4.8  
At1g74650.1 68414.m08645 myb family transcription factor (cY13) ...    25   4.8  
At5g13550.1 68418.m01565 sulfate transporter family protein simi...    25   8.4  

>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type(RING finger)
          Length = 358

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 5   PEAIDDHNHSVKSYTDKAEAV-GRVSSVTLLTCPISHVFPFVERDNRQTTP 54
           P A   H+HS       A  V G V S      P +H F F  R N++++P
Sbjct: 204 PVAPQYHHHSPSFSLPAAHVVDGEVDSSAARGLPYAHPFLFSHRSNQRSSP 254


>At1g17940.1 68414.m02220 expressed protein
          Length = 394

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 9   DDHNHSVKSYTDKAEAVGR-VSSVTLLTCPISHVFPFVERDNRQTTPIKI 57
           D HNH   S  ++  ++   + +   L C + HV P    + R++ P+ +
Sbjct: 153 DGHNHPKVSEENRRTSIDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDL 202


>At1g16270.1 68414.m01948 protein kinase family protein contains
           PF|00069 Eukaryotic protein kinase domain. ESTs
           gb|H37741, gb|T43005 and gb|AI100340 come from this gene
          Length = 1147

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 12  NHSVKSYTDKAEAVGRVSSV--TLLTCPISHVFPFVERDNRQTTPIK 56
           NH      D  E   R  SV  T+ +   +H+ P   RD RQ TP+K
Sbjct: 491 NHQNPPQADDTEVKNREPSVATTVPSQDAAHMLP-PRRDTRQNTPVK 536


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
          putative ATP-dependent helicases
          Length = 1058

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 5  PEAIDDHNHSVKSYTDKAEAVGRVSSVTLLTCPISHVFPFVERDNRQT 52
          P A    N  +    +K +   RV+++T+    I  +FPF +++ RQT
Sbjct: 47 PPASSSSNFHLYIKGEKLKLDTRVAAITINDGDILGLFPFKKKELRQT 94


>At1g74650.1 68414.m08645 myb family transcription factor (cY13)
           similar to myb protein cY13 GI:928930 from [Arabidopsis
           thaliana]; contains Pfam profile: PF00249 myb
           DNA-binding domain; identical to cDNA cY13 gene
           GI:928929
          Length = 330

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 7/28 (25%), Positives = 16/28 (57%)

Query: 1   MPPTPEAIDDHNHSVKSYTDKAEAVGRV 28
           +PP P++   H+HS  +Y    + + ++
Sbjct: 187 IPPDPDSPKPHHHSTTTYASSTDNISKL 214


>At5g13550.1 68418.m01565 sulfate transporter family protein similar
           to sulfate transporter [Arabidopsis thaliana]
           GI:3777483; contains Pfam profiles PF00916: Sulfate
           transporter family, PF01740: STAS domain
          Length = 685

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 6   EAIDDHNHSVKSYTDKAEAVGRVSSVTLLTCPISHV 41
           + + ++  +V  YT++   V R++ V L   P++H+
Sbjct: 547 DRLREYEVAVDKYTNRGLEVDRINFVILEMSPVTHI 582


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,107
Number of Sequences: 28952
Number of extensions: 42317
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 7
length of query: 59
length of database: 12,070,560
effective HSP length: 39
effective length of query: 20
effective length of database: 10,941,432
effective search space: 218828640
effective search space used: 218828640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)