Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000810-TA|BGIBMGA000810-PA|undefined
         (65 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   1.1  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   1.8  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    19   4.2  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    19   5.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    18   9.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    18   9.8  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    18   9.8  

>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 1.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 13  VTHDTLLAITQTYLSLINPVRASSQDVSCSLLKTQTDRFSKIYIFVITPNL 63
           V  DT+L I      +I   +    +    +LKT ++R  K  IF  +P L
Sbjct: 351 VAADTVLFILNISTIIITARKKQQWNSLIKILKTVSNRNDKGDIFWFSPFL 401


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory
          receptor candidate 61 protein.
          Length = 670

 Score = 20.2 bits (40), Expect = 1.8
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 9  SWALVTHDTLLAITQTYLSLINPVRASSQDVSCSLL 44
          SW L+    LL +  +YL  +   +    D +C+++
Sbjct: 11 SW-LILLSLLLGLYPSYLQTVGKCQRLKTDKNCTIV 45


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory
          receptor candidate 51 protein.
          Length = 771

 Score = 19.0 bits (37), Expect = 4.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 53 KIYIFVITPNLSL 65
          KI++F I  NLS+
Sbjct: 80 KIFLFAIYTNLSI 92


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 18.6 bits (36), Expect = 5.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 43  LLKTQTDRFSKIYIFVITPNL 63
           +LK   D F+ I+ ++I  N+
Sbjct: 104 ILKESVDTFNDIFGWIILCNI 124


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 17.8 bits (34), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 52  SKIYIFVITPNLSL 65
           S I IFV+ P L +
Sbjct: 171 SAILIFVVLPELDV 184


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 17.8 bits (34), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 52  SKIYIFVITPNLSL 65
           S I IFV+ P L +
Sbjct: 171 SAILIFVVLPELDV 184


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 17.8 bits (34), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 13  VTHDTLLAITQTYLSLINPVRASSQDVS 40
           V+H+ L  +  T LSL +    S  D+S
Sbjct: 350 VSHNLLGKLPLTSLSLASAQTLSELDLS 377


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,027
Number of Sequences: 317
Number of extensions: 344
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 65
length of database: 114,650
effective HSP length: 43
effective length of query: 22
effective length of database: 101,019
effective search space:  2222418
effective search space used:  2222418
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.6 bits)
S2: 34 (17.8 bits)