GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000810-TA|BGIBMGA000810-PA|undefined
         (65 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   1.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   1.6  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   2.2  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    24   2.9  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    23   3.8  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    23   5.0  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   5.0  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    22   8.7  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    22   8.7  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    22   8.7  

>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 16  DTLLAITQTYLSLINPVRASSQDVSCSLLKTQTDRFSKIYIFVITPN 62
           D + A   +Y S   P  A      CS L + T+     YIF   PN
Sbjct: 227 DCIAAFLSSYFS---PPNAEFDSTFCSTLSSLTNSEKPTYIFNFKPN 270


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 16  DTLLAITQTYLSLINPVRASSQDVSCSLLKTQTDRFSKIYIFVITPN 62
           D ++A   T  SL++P+R+    +S S      +  ++I   + TP+
Sbjct: 465 DDIVADDYTKFSLLSPIRSDMSGISASPNTNLKEHRTRILQMLATPD 511


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 11 ALVTHDTLLAITQTYLSLINPVRA-SSQDVSCSLLKTQTDRFSKIYI 56
          AL+  D + +I + +  +  P    S+ DVS  L+ TQ+D   + Y+
Sbjct: 22 ALIQEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDTQSDSNEREYL 68


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 25  YLSLINPVRASSQDVSCSLL 44
           +L L++P+  SS+DVS  LL
Sbjct: 99  FLYLLSPISQSSRDVSSHLL 118


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 34   ASSQDVSCSLLKTQTDRFSKIYIFVIT 60
            ++  D  CSLL    D  S +YIF+++
Sbjct: 1236 STKSDDRCSLLAQFNDPKSDVYIFMLS 1262


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 16  DTLLAITQTYLSLINPVRASSQDVSCSLL 44
           DT+L   ++ LS  NP  A S DV   L+
Sbjct: 484 DTILRFPESKLSGFNPSVADSSDVVFQLV 512


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 10/22 (45%), Positives = 17/22 (77%)

Query: 28  LINPVRASSQDVSCSLLKTQTD 49
           L +P+R SS+DV  SLL+++ +
Sbjct: 686 LESPLRESSKDVISSLLRSKME 707


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/50 (24%), Positives = 19/50 (38%)

Query: 7   LGSWALVTHDTLLAITQTYLSLINPVRASSQDVSCSLLKTQTDRFSKIYI 56
           L  W +  H     + +T    +N +       SCSL K Q    + + I
Sbjct: 172 LNEWLVEIHSNFCLMPETLYLAVNIIDRFLSRRSCSLSKFQLTGITALLI 221


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 5   ATLGSWALVTHDTLLAIT 22
           +T+G+W  + H T++ IT
Sbjct: 101 STVGTWFSIGHSTVVLIT 118


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 27   SLINPVRASSQDVSCSLLKTQTDRFSK 53
            ++I+PV +S  +   S LK  T RFS+
Sbjct: 1151 AIISPVGSSPVEAVSSTLKNLTLRFSQ 1177


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,439
Number of Sequences: 5004
Number of extensions: 7057
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 10
length of query: 65
length of database: 2,362,478
effective HSP length: 45
effective length of query: 20
effective length of database: 2,137,298
effective search space: 42745960
effective search space used: 42745960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)