GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000810-TA|BGIBMGA000810-PA|undefined
         (65 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK023789-1|BAB14680.1|  603|Homo sapiens protein ( Homo sapiens ...    27   9.6  

>AK023789-1|BAB14680.1|  603|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13727 fis, clone PLACE3000103. ).
          Length = 603

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 9   SWALVTHDTLLAITQTYLSLINPVRASS 36
           SWAL+ H T L +T T L + +P   +S
Sbjct: 514 SWALILHATALWLTSTGLVVADPDEGAS 541


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,400,403
Number of Sequences: 224733
Number of extensions: 206854
Number of successful extensions: 3245
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3244
Number of HSP's gapped (non-prelim): 1
length of query: 65
length of database: 73,234,838
effective HSP length: 44
effective length of query: 21
effective length of database: 63,346,586
effective search space: 1330278306
effective search space used: 1330278306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)