GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000810-TA|BGIBMGA000810-PA|undefined
         (65 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48070.1 68414.m05360 expressed protein                             29   0.29 
At3g55320.1 68416.m06144 ABC transporter family protein similar ...    26   2.7  
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ...    26   3.6  
At1g31090.1 68414.m03806 F-box family protein contains Pfam PF00...    26   3.6  
At3g45640.1 68416.m04929 mitogen-activated protein kinase, putat...    25   8.3  

>At1g48070.1 68414.m05360 expressed protein
          Length = 114

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 19 LAITQTYLSLINPVRASSQDVSCSLLKTQTDRFSKIYIF 57
          L +T T L ++  V +S  D  C++L  Q  R S+ Y+F
Sbjct: 26 LILTTTQLPIVVTVTSSLCDDRCTILDDQLARLSETYVF 64


>At3g55320.1 68416.m06144 ABC transporter family protein similar to
           multidrug resistant P-glycoprotein pmdr1 GI:4204793 from
           [Solanum tuberosum]
          Length = 1408

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 7   LGSWALVTHDTLLAITQTYLSLINPVRASSQDVSCSLLKTQTDRFSKIYIFVI 59
           +GS A   H T L +   Y + I  V A S D S    + Q DR  ++ + ++
Sbjct: 90  VGSVAAAAHGTALIVYLHYFAKIVDVLAFSNDSSQQRSEHQFDRLVQLSLTIV 142


>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 596

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 25  YLSLINPVRASSQDVSCSLLKTQTD 49
           YLSL   V ++S D+ C + +T+TD
Sbjct: 466 YLSLCQGVGSASGDLWCDICETKTD 490


>At1g31090.1 68414.m03806 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 311

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 25  YLSLINPVRASSQDVSCSLLKTQTDRFSKIYIFV 58
           Y+   NP +++ Q V    ++ + D F ++Y FV
Sbjct: 233 YVFYFNPEKSTLQSVEIQGVREEEDWFHRVYYFV 266


>At3g45640.1 68416.m04929 mitogen-activated protein kinase,
          putative / MAPK, putative (MPK3) identical to
          mitogen-activated protein kinase homolog
          (AtMPK3)[Arabidopsis thaliana] SWISS-PROT:Q39023;
          PMID:12119167
          Length = 370

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 17 TLLAITQTYLSLINPVRASSQDVSCSLLKTQTD 49
          +L  IT  Y   I P+   +  + CS+L T+T+
Sbjct: 29 SLFEITSKYRPPIIPIGRGAYGIVCSVLDTETN 61


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,283,763
Number of Sequences: 28952
Number of extensions: 32849
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 5
length of query: 65
length of database: 12,070,560
effective HSP length: 45
effective length of query: 20
effective length of database: 10,767,720
effective search space: 215354400
effective search space used: 215354400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)