Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000809-TA|BGIBMGA000809-PA|undefined
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...   176   9e-45
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...   124   3e-29
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    29   2.6  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   7.8  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score =  176 bits (428), Expect = 9e-45
 Identities = 102/248 (41%), Positives = 142/248 (57%), Gaps = 18/248 (7%)

Query: 326 GCASWKWYFPYHYAPFASDFVNICGLSTQFEKGTQPFRPLEQLMGVFPAASAQHVPRPWA 385
           GC SW WY+PYHYAPFA+DF ++  +  +FE   QPF+P EQL+GV PAAS  ++P    
Sbjct: 631 GCPSWTWYYPYHYAPFAADFKDLASIDVKFELN-QPFKPYEQLLGVLPAASKNNLPEKLQ 689

Query: 386 RLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKELTQAEIQ 445
            LM+D  S IIDFYP +F IDLNGKKF WQGVALLPF+DENRL  A+   Y +LT+ E +
Sbjct: 690 TLMTDENSEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESK 749

Query: 446 RNIRGHDRLYVSTGNQSY-EYILGLYEEAQQDLRKLIEDKQKYPYQSEGVRGNVMLSADN 504
           RN  G   L++S  +  + E +  LY + +Q     +  K      + G+ G V  + D+
Sbjct: 750 RNEDGSTLLFISEHHPMFSELVKQLYSKKRQGKPLKLSGK-----MAHGLFGKVNTN-DS 803

Query: 505 VLIGGQLPSPV-VGLAPVL-------GNRVVVVRFEDPQYPDEFVFPARRLQRATAPPRV 556
           V+    +  P+ V  A  L        N+ + + FE P+    FV  +  L+    P RV
Sbjct: 804 VIPNVSVQCPIDVTSADALQKYGSIDDNQSISLVFEVPK--SHFVHKSMLLRGVKMPNRV 861

Query: 557 LKPGALDQ 564
           L P  ++Q
Sbjct: 862 LTPEDINQ 869



 Score =  122 bits (295), Expect = 1e-28
 Identities = 53/93 (56%), Positives = 71/93 (76%)

Query: 1   MPNLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKCVYKTKGWI 60
           +PNLPFP+D ERA+DDWVF  FFVGNDFLPHLPSL+IR+GAV+RL  +++  +    G++
Sbjct: 310 VPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYL 369

Query: 61  TDSGDVELDRVQVIMTELGHVEDEIFKRRHQNE 93
           T  G V L R +VI++ +G+ ED+IFKR  Q E
Sbjct: 370 TLDGSVNLARAEVILSAVGNQEDDIFKRLKQQE 402



 Score = 36.7 bits (81), Expect = 0.010
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 182 VRLWEEGFKERYYESKFEVTRNNLEFRCYKTKLYMH 217
           VRL+E G++ERYYE KF ++ +  E      K Y+H
Sbjct: 584 VRLYEPGYRERYYEQKFHISPDEPEKIREAVKHYVH 619


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score =  124 bits (300), Expect = 3e-29
 Identities = 60/122 (49%), Positives = 76/122 (62%), Gaps = 1/122 (0%)

Query: 326 GCASWKWYFPYHYAPFASDFVNICGLSTQFEKGTQPFRPLEQLMGVFPAASAQHVPRPWA 385
           GC SW WY+ YH+AP  SD +    +   F+ GT PFRP EQLM V PA S   VP  + 
Sbjct: 536 GCQSWGWYYNYHFAPKISDVLKGLDVKIDFKMGT-PFRPFEQLMAVLPARSQALVPPCFR 594

Query: 386 RLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKELTQAEIQ 445
            LM +  SPIIDFYP +F +D NGK  +W+ V ++PF+DE RL  AL    K LT+ E +
Sbjct: 595 DLMVNSESPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTEEERK 654

Query: 446 RN 447
           RN
Sbjct: 655 RN 656



 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 39/82 (47%), Positives = 57/82 (69%)

Query: 6   FPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKCVYKTKGWITDSGD 65
           F YD E+ LDD++ + FFVGNDFLPHLP L I EGA+  + ++YKK +    G+I + G 
Sbjct: 270 FKYDLEKILDDFILLAFFVGNDFLPHLPGLHINEGALALMFSIYKKVMPSAGGYINEKGV 329

Query: 66  VELDRVQVIMTELGHVEDEIFK 87
           + + R+++I+ EL + E EIFK
Sbjct: 330 INMARLELILLELENFEKEIFK 351


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 313 GAAVRAGPVLGAPGC--ASWKWYF 334
           GAA+ AGP++G   C   +W+W F
Sbjct: 230 GAALVAGPIIGGAICQRTTWRWIF 253


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 47  NLYKKCVYKTKGWITDSGDVELDRVQVIMTELGHVED 83
           N +K+     +GWI+D  DV+L  +   +  L +V D
Sbjct: 429 NAHKENAIPIEGWISDPSDVDLLNLLSFLHALQYVHD 465


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,234
Number of Sequences: 5004
Number of extensions: 111819
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 7
length of query: 627
length of database: 2,362,478
effective HSP length: 77
effective length of query: 550
effective length of database: 1,977,170
effective search space: 1087443500
effective search space used: 1087443500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)