GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000809-TA|BGIBMGA000809-PA|undefined
         (627 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...   241   1e-63
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...   138   1e-32
U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    37   0.049
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    30   4.3  
U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical pr...    29   9.8  
AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    29   9.8  

>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score =  241 bits (590), Expect = 1e-63
 Identities = 124/278 (44%), Positives = 161/278 (57%), Gaps = 12/278 (4%)

Query: 326 GCASWKWYFPYHYAPFASDFVNICGLSTQFEKGTQPFRPLEQLMGVFPAASAQHVPRPWA 385
           GCASW WYFPYHYAPFASDF  +      F + T+PF PLEQLM VFPAAS QH+P  W 
Sbjct: 499 GCASWDWYFPYHYAPFASDFETVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQ 558

Query: 386 RLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKELTQAEIQ 445
           +LM    SPIID YP DF+IDLNGKK+AWQGVALLPFVDE RL   L+  Y  LT  E Q
Sbjct: 559 KLMIQDDSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQ 618

Query: 446 RNIRGHDRLYVSTGNQSYEYILGLYEEAQQDLRKLIEDKQKYPYQSEGVRGNVMLSADNV 505
           RN RG +R+++   ++S+E+   + E    DL  L       P    GV G +   +   
Sbjct: 619 RNTRGPNRIFIGRNHKSFEFFQQVAESKSDDLVPL------DPTLLNGVSGKIAYDSTAT 672

Query: 506 LIGGQLPSPV--VGLAPVLGNRVVVVRFEDPQYPDEFVFPARRLQRATAPPRVLKPGALD 563
             G    SPV       +  N  + V +EDP+YP +++FPA RL  A  P + LKP   +
Sbjct: 673 APGLPFVSPVNHDECQDLPTNCGICVLYEDPEYPQDYIFPALRLDGAKEPEKTLKPDDWN 732

Query: 564 QREHRNWRPQIVRSTGMVRSNTVASLESAGRRMLGHHL 601
            R    ++PQ+    G  R+    SL+ +G R + H++
Sbjct: 733 DRRDGRYQPQV----GFNRNAPRGSLDQSGHRQVHHYV 766



 Score =  157 bits (380), Expect = 3e-38
 Identities = 70/96 (72%), Positives = 81/96 (84%)

Query: 1   MPNLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKCVYKTKGWI 60
           MPNLPF +D ERALDDWVF+CFFVGNDFLPHLPSLEIREGA+DRL+ LYK+ VY+ KG++
Sbjct: 318 MPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAIDRLIKLYKEMVYQMKGYL 377

Query: 61  TDSGDVELDRVQVIMTELGHVEDEIFKRRHQNELSF 96
           T  G  ELDRV++IM  LG VEDEIFKRR Q+E  F
Sbjct: 378 TKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERF 413



 Score = 39.1 bits (87), Expect = 0.009
 Identities = 14/27 (51%), Positives = 23/27 (85%)

Query: 182 VRLWEEGFKERYYESKFEVTRNNLEFR 208
           +RL+E G+K+RYY +KF+V  +++EFR
Sbjct: 452 IRLYESGWKDRYYRAKFDVGSDDIEFR 478


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score =  138 bits (333), Expect = 1e-32
 Identities = 64/127 (50%), Positives = 82/127 (64%), Gaps = 3/127 (2%)

Query: 326 GCASWKWYFPYHYAPFASDFVNICGLSTQFEKGTQPFRPLEQLMGVFPAASAQHVPRPWA 385
           GC SW W++P+HYAPF SD     G+  +FE  ++PF P EQL+ V P ASA  +PRP  
Sbjct: 535 GCVSWSWFYPHHYAPFISDVRGFVGMRMEFEL-SEPFHPFEQLLAVLPEASADCLPRPLR 593

Query: 386 RLMS-DPF-SPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKELTQAE 443
            LMS DP  SPI DFYP +F+ DLNGK+  W+ V L+PF++E RL +A+E     LT  E
Sbjct: 594 ELMSSDPAKSPICDFYPANFETDLNGKRNEWEAVVLIPFIEEKRLLEAIEAKRSRLTSEE 653

Query: 444 IQRNIRG 450
             RN  G
Sbjct: 654 NARNSHG 660



 Score = 80.6 bits (190), Expect = 3e-15
 Identities = 35/91 (38%), Positives = 55/91 (60%)

Query: 3   NLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKCVYKTKGWITD 62
           +LPF Y+ ER +DDW+ +   VGNDFLPHLP++ I + A+  L + YKK +    G+I +
Sbjct: 277 SLPFEYEMERIVDDWILLGLLVGNDFLPHLPNIHIHDDALPLLYSTYKKVLPTLDGYINE 336

Query: 63  SGDVELDRVQVIMTELGHVEDEIFKRRHQNE 93
           +G + L R +  + EL   +   F  R ++E
Sbjct: 337 AGYLNLSRFEAFLAELALNDKTSFMERLEDE 367


>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical protein
            C16A3.3 protein.
          Length = 1743

 Score = 36.7 bits (81), Expect = 0.049
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 478  RKLIEDKQKYPYQSEGVRGNVMLSADNVLIGGQLPSPVVGLAPVLGNRVVVVRFEDPQYP 537
            ++ + D++K    +EG  G V  S  +V   G     V+G A +  NR     F D + P
Sbjct: 969  KEFVGDEKKKKQTAEGSDGAVSTSTKSVKNFGVYSGVVIGTANLEENRKRNSLFADIRLP 1028

Query: 538  DEFVFPARRLQRATAPPRVLK-PGALDQREHRNWRPQ-IVRSTGMVRSN 584
             + +    RL  +  PP +LK    LD+   RN R   IVR  G ++S+
Sbjct: 1029 GDNI---GRLHVSELPPSLLKAENPLDEFVKRNVRKAVIVRIIGFIKSS 1074


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 555  RVLKPGALDQREHRNWRPQIVRSTGMVRSNTVASLESAGR-RMLGHHLPRERAYASVPPP 613
            R+L    L     R W P ++      ++ +  S+ SA +   L  +LP+  + ASV PP
Sbjct: 1529 RILPEETLSPASARLWTPDMISKYISSKAISTESVSSAEQPSYLSSNLPQSSSVASVKPP 1588

Query: 614  HN 615
             N
Sbjct: 1589 SN 1590


>U47144-5|AAB52621.2| 1410|Caenorhabditis elegans Hypothetical
           protein ZC53.4 protein.
          Length = 1410

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 187 EGFKERYYESKFEVTRN-NLEFRCYKTKLYMHFASNPMIRQIRRTVQCWVRQERAAPDPH 245
           + F ++ +  K  +  N  LEF  Y  K+     S P +R  + T   W    +    PH
Sbjct: 918 DSFTKKIHNMKSYIGYNATLEFNKYIIKISQEIMSLPSVRMKKLTQDEWTEFNKNQECPH 977

Query: 246 C 246
           C
Sbjct: 978 C 978


>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 29.1 bits (62), Expect = 9.8
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 421 PFVDENRLFKALEPYYKELTQAEIQRNIRGHDRL 454
           P ++E++L+KALE   K + +AE   ++  H++L
Sbjct: 309 PPIEESQLYKALEIICKHIEKAETTGSLLSHEQL 342


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.140    0.451 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,117
Number of Sequences: 27539
Number of extensions: 610436
Number of successful extensions: 1164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 10
length of query: 627
length of database: 12,573,161
effective HSP length: 86
effective length of query: 541
effective length of database: 10,204,807
effective search space: 5520800587
effective search space used: 5520800587
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)