Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000809-TA|BGIBMGA000809-PA|undefined
(627 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 180 2e-45
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 159 4e-39
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 156 4e-38
At5g26910.1 68418.m03209 expressed protein 33 0.57
At4g30150.1 68417.m04287 expressed protein 31 2.3
At3g05750.1 68416.m00646 expressed protein 30 5.3
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 180 bits (439), Expect = 2e-45
Identities = 90/220 (40%), Positives = 133/220 (60%), Gaps = 4/220 (1%)
Query: 326 GCASWKWYFPYHYAPFASDFVNICGLSTQFEKGTQPFRPLEQLMGVFPAASAQHVPRPWA 385
G SW+W++PYHYAPFASD ++ + +FE GT PF+P QL+GVFPAAS+ +P +
Sbjct: 580 GVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGT-PFKPFNQLLGVFPAASSHALPERYR 638
Query: 386 RLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKELTQAEIQ 445
LM+DP SPIIDFYPTDF++D+NGK+F+WQG+A LPF+DE RL +A+ LT E +
Sbjct: 639 TLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKR 698
Query: 446 RNIRGHDRLYVSTGNQSYEYILGLYEEAQQ-DLRKLIEDKQKY-PYQSEGVRGNVMLSAD 503
RN R D L+++T ++ E + L +Q R+ ++ K K P S+G+ G +
Sbjct: 699 RNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNG-YLTPCS 757
Query: 504 NVLIGGQLPSPVVGLAPVLGNRVVVVRFEDPQYPDEFVFP 543
SP+ G+ +L N+V+ + P + P
Sbjct: 758 GETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRP 797
Score = 103 bits (246), Expect = 5e-22
Identities = 45/89 (50%), Positives = 64/89 (71%)
Query: 1 MPNLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKCVYKTKGWI 60
+PN PF D ER +DD++F+CFFVGNDFLPH+P+LEIREGA++ L+ +YKK G++
Sbjct: 320 IPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRSFDGYL 379
Query: 61 TDSGDVELDRVQVIMTELGHVEDEIFKRR 89
TD L RV+ + +G ED+IF++R
Sbjct: 380 TDGCKPNLKRVEQFIQAVGSFEDKIFQKR 408
Score = 29.1 bits (62), Expect = 9.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 182 VRLWEEGFKERYYESKFEV 200
V+L + G++ERYYE KF V
Sbjct: 531 VKLGQPGWRERYYEEKFSV 549
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 159 bits (387), Expect = 4e-39
Identities = 89/220 (40%), Positives = 120/220 (54%), Gaps = 2/220 (0%)
Query: 326 GCASWKWYFPYHYAPFASDFVNICGLSTQFEKGTQPFRPLEQLMGVFPAASAQHVPRPWA 385
G SW+W++PYHYAPFASD N+ L F G +PF+P +QLMG PAAS+ +P +
Sbjct: 486 GVCSWQWFYPYHYAPFASDLKNLPDLEITFFIG-EPFKPFDQLMGTLPAASSNALPGEYR 544
Query: 386 RLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKELTQAEIQ 445
+LM+DP SPI+ FYP DF++D+NGK+FAWQG+A LPF++E L A + LT E Q
Sbjct: 545 KLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTVEEQQ 604
Query: 446 RNIRGHDRLYVSTGNQSYEYILGLYEEAQQDLRKLIEDKQKYPYQSEGVRGNVMLSADNV 505
RN D LYV + + IL Y Q P S+G+ G + S N
Sbjct: 605 RNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGMNGFLWFSERNG 664
Query: 506 LIGGQLPSPVVGLAPVLGNRVVVVRFEDPQYPDEFVFPAR 545
++ SPV GL + NR + V + P P R
Sbjct: 665 -FQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPR 703
Score = 107 bits (258), Expect = 2e-23
Identities = 47/89 (52%), Positives = 70/89 (78%)
Query: 1 MPNLPFPYDFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKCVYKTKGWI 60
+P+ PF +FER +DD+VF+CFFVGNDFLPH+P+LEIREGA++ L+++Y+K G++
Sbjct: 316 IPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYL 375
Query: 61 TDSGDVELDRVQVIMTELGHVEDEIFKRR 89
TDSG+V LDRV+ + + ED+IF++R
Sbjct: 376 TDSGEVLLDRVEHFIQAVAVNEDKIFQKR 404
Score = 29.9 bits (64), Expect = 5.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 182 VRLWEEGFKERYYESKFEVT 201
++L E G+KERYY KF T
Sbjct: 437 IKLGEPGYKERYYAEKFSTT 456
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 156 bits (379), Expect = 4e-38
Identities = 86/213 (40%), Positives = 121/213 (56%), Gaps = 6/213 (2%)
Query: 326 GCASWKWYFPYHYAPFASDFVNICGLSTQFEKGTQPFRPLEQLMGVFPAASAQHVPRPWA 385
G SW W++PYHYAPFASD + L +FE G+ PF+P QL+ V P+ASA +P +
Sbjct: 572 GVCSWNWFYPYHYAPFASDLKGLEKLDIKFELGS-PFKPFNQLLAVLPSASAHALPECYR 630
Query: 386 RLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKELTQAEIQ 445
LM++P SPI DFYP DF+ID+NGK+++WQG++ LPFV+E RL +A K LT EI+
Sbjct: 631 SLMTNPDSPIADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEIR 690
Query: 446 RNIRGHDRLYVSTGNQSYEYILGLYEEA---QQDLRKLIEDKQKYPYQSEGVRGNVMLSA 502
RN D L+V + E I L + R I +K P S+G+ G + S
Sbjct: 691 RNSALFDMLFVVASHPLGELIRSLNSRTNNLSNEERATIIEKID-PGLSDGMNGYI-ASC 748
Query: 503 DNVLIGGQLPSPVVGLAPVLGNRVVVVRFEDPQ 535
S V G+ VL N+V+ ++ P+
Sbjct: 749 GGDSQPSCFCSTVEGMEDVLTNQVICAIYKLPE 781
Score = 91.9 bits (218), Expect = 1e-18
Identities = 38/83 (45%), Positives = 61/83 (73%)
Query: 9 DFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVNLYKKCVYKTKGWITDSGDVEL 68
+ +R +DD++F+CFFVGNDFLPH+P+LEIREGA++ L+++YK K ++TDS + L
Sbjct: 328 NLDRLIDDFIFICFFVGNDFLPHMPTLEIREGAIELLMSVYKNKFRSAKKYLTDSSKLNL 387
Query: 69 DRVQVIMTELGHVEDEIFKRRHQ 91
V+ + +G E++IF++R Q
Sbjct: 388 RNVERFIKAVGMYENQIFQKRAQ 410
>At5g26910.1 68418.m03209 expressed protein
Length = 900
Score = 33.1 bits (72), Expect = 0.57
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 543 PARRLQRATAPPRVLKPGALDQREHRNWRPQIVRSTGMVRSNTVASLESAGRRMLGHHLP 602
P R Q T PPR KP + H + P +RS G V S + A RM+ P
Sbjct: 210 PIERFQSETFPPRSAKPICVTNNRHLS--P--IRSPGFVPSRNPIYVMEAASRMI-EPSP 264
Query: 603 RERAYASVPPPHNPQRGKPLRVHN 626
R A P ++P P+R+ +
Sbjct: 265 RMVARTRFSPSNSPS-SVPMRIQD 287
>At4g30150.1 68417.m04287 expressed protein
Length = 2009
Score = 31.1 bits (67), Expect = 2.3
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 380 VPRPWARLMSDPFSPIIDFYPTDFKIDLNGKKFAWQGVALLPFVDENRLFKALEPYYKEL 439
+ +P A ++ D I FY D D + + GVAL VD N K+L+ Y ++
Sbjct: 910 ISQPSASIV-DTIKHISAFYLKDDSADCSLLIYILYGVALQRLVDLNSHIKSLD-YVSQI 967
Query: 440 TQAEIQRNIRGHDRLYVSTGNQSYEYILG 468
+ +I + H + G + +++LG
Sbjct: 968 SDNQINDTMLKHVSVLKREGEELTDFLLG 996
>At3g05750.1 68416.m00646 expressed protein
Length = 798
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 543 PARRLQRATAPPRVLKPGALDQREHRNWRPQIVRSTGMVRSNTVASLESAGRRML 597
P R Q T PPR KP + +R P +RS G V+S AS+ RM+
Sbjct: 168 PIDRFQTETLPPRSAKP--IPVTHNRLLSP--IRSPGFVQSRNPASVMEEASRMI 218
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.140 0.451
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,196,099
Number of Sequences: 28952
Number of extensions: 582747
Number of successful extensions: 1097
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 12
length of query: 627
length of database: 12,070,560
effective HSP length: 85
effective length of query: 542
effective length of database: 9,609,640
effective search space: 5208424880
effective search space used: 5208424880
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)
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