Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000808-TA|BGIBMGA000808-PA|IPR004859|Putative 5-3
exonuclease
(322 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 139 2e-33
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083) 41 0.001
SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_20782| Best HMM Match : OGFr_III (HMM E-Value=2.5) 33 0.41
SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08) 30 2.2
SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_19771| Best HMM Match : DUF1014 (HMM E-Value=1.4) 30 2.2
SB_57525| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_11657| Best HMM Match : bZIP_2 (HMM E-Value=3e-16) 29 3.9
SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33) 28 8.9
SB_34614| Best HMM Match : FMO-like (HMM E-Value=0) 28 8.9
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 28 8.9
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 139 bits (337), Expect = 2e-33
Identities = 67/101 (66%), Positives = 76/101 (75%)
Query: 19 VECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMM 78
V+ + + +VDG VD+S PNPN EFDNLYLDMNGIIHPC HPE+KPAPK+EDEMM
Sbjct: 710 VQELREMAKEVDGVKSPVDASQPNPNDYEFDNLYLDMNGIIHPCCHPENKPAPKNEDEMM 769
Query: 79 VAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
VAIFE IDR+F IVRPRKLLYMAIDGV N S R+
Sbjct: 770 VAIFEYIDRIFSIVRPRKLLYMAIDGVGTEFMDNLSISLRY 810
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/37 (62%), Positives = 25/37 (67%)
Query: 164 GTPFMDRLSKCLHYYIHDRLNNDPGWKGIKVILSDAN 200
GT FMD LS L YYI DRLN DPGW+ IK I + N
Sbjct: 797 GTEFMDNLSISLRYYIADRLNTDPGWRNIKNIPAGIN 833
>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
Length = 1466
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 210 MDYIRRQRAQPDHDPNTQHVLCGADADL 237
M++IR +R +PD+D NT+H L G DADL
Sbjct: 1 MEFIRTERTRPDYDANTRHCLYGLDADL 28
>SB_56155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 452
Score = 32.7 bits (71), Expect = 0.41
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Query: 244 THEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFGNQDNFIFVR 303
TH P+ T+I F P +PRP GH + G P + S F F +
Sbjct: 347 THLPDLTVITPVFYPGQPRPVFYVASRGHH-ADIGGAAPGSMPPTSKSIFDEGAVFKSFK 405
Query: 304 LSVLREYLERELQESVL 320
L + E+EL + ++
Sbjct: 406 LVTNGVFQEKELTKKLM 422
>SB_20782| Best HMM Match : OGFr_III (HMM E-Value=2.5)
Length = 251
Score = 32.7 bits (71), Expect = 0.41
Identities = 21/68 (30%), Positives = 27/68 (39%)
Query: 197 SDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEF 256
S + PGE E I I + D D + + G A+ I+ G T PN I F
Sbjct: 161 SSQDKPGEKEVSIPTDISDYLEKIDQDEDEEEAKAGVSAEAIVQGKVTLRPNLFIGLSAF 220
Query: 257 KPNKPRPC 264
KP C
Sbjct: 221 KPVPSTRC 228
>SB_34761| Best HMM Match : zf-CCHC (HMM E-Value=4.9e-08)
Length = 59
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 257 KPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFGNQDNFIFVRLSVLREYLEREL 315
K + + C CG+ GH ++CT +P S FG + +FV ++ + + +R L
Sbjct: 3 KMSSSKDCYKCGKTGHFARDCTEASPGGG--GSGAKFGGKTR-LFVTCALYQGFAKRNL 58
>SB_24673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 110 KMNQQRSRRFRASKETQEKIEEVARIRNELQAKGAYLPPERPK 152
K+++Q R +ASK +E I EV + LQ++ + P+RPK
Sbjct: 350 KLSKQSQRIMKASKN-EELIAEVQEEKETLQSRVETVKPDRPK 391
>SB_19771| Best HMM Match : DUF1014 (HMM E-Value=1.4)
Length = 606
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 113 QQRSRRFRASKETQEKIEEV-ARIRNELQAKGAYLPP 148
QQR + + SKET+ I+ + A I+ ++ KG LPP
Sbjct: 528 QQRHEKLQKSKETERFIDALRAMIKEKMGKKGVRLPP 564
>SB_57525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 29.5 bits (63), Expect = 3.9
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 133 ARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIHDRLNNDPGWKGI 192
AR R+ + P ++ A FDS+ I ++ + C Y +H R +++PG+ G
Sbjct: 12 ARARSFTSPQSYGNPVDKTDNAPFDSSIID----MIEANASCPEY-LHTRSSSNPGYHGS 66
Query: 193 KVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHV 229
V L+++ I +Y Q + + N +HV
Sbjct: 67 PVRLTNSEPTESSTDMIEEYGNSQHIE-ERLRNARHV 102
>SB_11657| Best HMM Match : bZIP_2 (HMM E-Value=3e-16)
Length = 298
Score = 29.5 bits (63), Expect = 3.9
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 15 PSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKDE 74
P VIV+ + KP D +L +++++ + D G + + PKDE
Sbjct: 87 PPVIVDSGQSKPPDRKMKL-QIETNMARRQKARSRDSANDFKGQQSDLNGQQSRKKPKDE 145
Query: 75 DEMM-VAIFECIDRLFRIVRPRKLLYMAI---DGVAPRAKMNQQRSRRFRASKETQEKIE 130
E + I + R F + + Y A + VA R + +R + S + ++ +
Sbjct: 146 YEYNPLPIGKKARRKFVPDQEKDDRYWARRVKNNVAARRSRDMRRQKEIEISMKWKQLEK 205
Query: 131 EVARIRNELQ 140
E AR+R ELQ
Sbjct: 206 ENARLREELQ 215
>SB_52268| Best HMM Match : SecA_PP_bind (HMM E-Value=0.33)
Length = 774
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 20 ECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGII---HPCTHPEDKPAPKDE 74
+C E+ P D D +V + L E D+L + N ++ HP P+D P + E
Sbjct: 236 QCAEELPGDADTPKEHVIAKLRQDEIDEKDSLPENTNSVVIVEHPIEVPDDPPRIQKE 293
>SB_34614| Best HMM Match : FMO-like (HMM E-Value=0)
Length = 475
Score = 28.3 bits (60), Expect = 8.9
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 207 HKIMDYIRRQRAQPDHDPNTQHVLCGAD-ADLIMLGLATHEPNFTIIRE 254
+K +D+ R+ QPD+ P +QH D + IM G T +PN + E
Sbjct: 254 NKKVDH-RKLGLQPDYHPTSQHPTVNDDLPNRIMNGTVTVKPNVSTFTE 301
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 28.3 bits (60), Expect = 8.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 260 KPRPCDVCGQLGHEMKECT 278
+P+ C C ++GH +KECT
Sbjct: 199 QPQSCLRCSEIGHGVKECT 217
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.139 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,342,859
Number of Sequences: 59808
Number of extensions: 559572
Number of successful extensions: 1494
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 13
length of query: 322
length of database: 16,821,457
effective HSP length: 82
effective length of query: 240
effective length of database: 11,917,201
effective search space: 2860128240
effective search space used: 2860128240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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