Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000808-TA|BGIBMGA000808-PA|IPR004859|Putative 5-3
exonuclease
(322 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 381 e-106
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 369 e-102
At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical ... 368 e-102
At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger) fa... 36 0.036
At4g32620.1 68417.m04644 expressed protein predicted protein T10... 32 0.45
At1g69120.1 68414.m07909 floral homeotic protein APETALA1 (AP1) ... 31 1.0
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 30 1.8
At4g25880.2 68417.m03722 pumilio/Puf RNA-binding domain-containi... 30 2.4
At4g25880.1 68417.m03721 pumilio/Puf RNA-binding domain-containi... 30 2.4
At3g31950.1 68416.m04046 hypothetical protein 30 2.4
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ... 29 3.2
At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 fam... 29 3.2
At1g13570.1 68414.m01591 F-box family protein contains F-box dom... 29 3.2
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 29 4.2
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 29 5.5
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 29 5.5
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 29 5.5
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 29 5.5
At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY... 28 7.3
At4g00980.1 68417.m00132 zinc knuckle (CCHC-type) family protein... 28 7.3
At3g04810.2 68416.m00521 protein kinase, putative similar to LST... 28 7.3
At3g04810.1 68416.m00520 protein kinase, putative similar to LST... 28 7.3
At4g23040.1 68417.m03322 UBX domain-containing protein similar t... 28 9.6
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 28 9.6
At3g45390.1 68416.m04900 lectin protein kinase family protein co... 28 9.6
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 28 9.6
At3g14360.1 68416.m01817 lipase class 3 family protein low simil... 28 9.6
At2g15550.1 68415.m01781 hypothetical protein similar to zinc fi... 28 9.6
At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to al... 28 9.6
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 381 bits (937), Expect = e-106
Identities = 183/322 (56%), Positives = 233/322 (72%), Gaps = 9/322 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVP+F+RWL+ KYP ++ + +E++P +++G + VD+S PNPN +E+DNLYLDMNGIIH
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEPVEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PC HPED+P+P +E+ +F+ IDRLF +VRPRKLLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH 180
++K+ + E R+R E + +G LPP+ + FDSN ITPGT FM LS L YY+H
Sbjct: 121 SAKDASDAAAEEERLREEFEREGRRLPPKVDSQV-FDSNVITPGTEFMGVLSIALQYYVH 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIML 240
RLN+D GWK IKVILSDANVPGEGEHKIM YIR QR P DPNT+H L G DADLIML
Sbjct: 180 LRLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 239
Query: 241 GLATHEPNFTIIRE-EFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFGNQDNF 299
GLATHE +F+I+RE + P + C +CGQ+GH C G P SD G+ ++F
Sbjct: 240 GLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEG-KPKKRAGESDEK-GDGNDF 297
Query: 300 I-----FVRLSVLREYLERELQ 316
+ F+ + VLREYLE E++
Sbjct: 298 VKKPYQFLHIWVLREYLELEMR 319
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 369 bits (907), Expect = e-102
Identities = 181/317 (57%), Positives = 222/317 (70%), Gaps = 5/317 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVD-GQLVYVDSSLPNPNGVEFDNLYLDMNGII 59
MGVPAF+RWL+ +YP I + VE++PTD G L+ VD + PNPNG EFDNLYLDMNGII
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60
Query: 60 HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
HPC HPE KPAP D++ ++FE ID LF +VRPRK+LY+AIDGVAPRAKMNQQRSRRF
Sbjct: 61 HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF 120
Query: 120 RASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYI 179
RA+K+ E E R+R + + +G L + E DSN ITPGTPFM LS L YYI
Sbjct: 121 RAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAET-CDSNVITPGTPFMAILSVALQYYI 179
Query: 180 HDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIM 239
RLN++PGW+ +KVILSD+NVPGEGEHKIM YIR QR P DPNT+H L G DADLIM
Sbjct: 180 QSRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
Query: 240 LGLATHEPNFTIIREEFK-PNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFGNQDN 298
L LATHE +F+I+RE P + C VCGQ GH +C G + + P ++
Sbjct: 240 LSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAADIPI--HKKK 297
Query: 299 FIFVRLSVLREYLEREL 315
+ F+ + VLREYL+ EL
Sbjct: 298 YQFLNIWVLREYLQYEL 314
>At5g42540.1 68418.m05178 5'-3' exoribonuclease (XRN2) identical to
XRN2 [Arabidopsis thaliana] GI:11875630; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 1012
Score = 368 bits (906), Expect = e-102
Identities = 181/322 (56%), Positives = 226/322 (70%), Gaps = 7/322 (2%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQ--LVYVDSSLPNPNGVEFDNLYLDMNGI 58
MGVP+F+RWL ++YP I E +E++P +V+G + +DSS PNPNG E+DNLYLDMNGI
Sbjct: 1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGI 60
Query: 59 IHPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
IHPC HPEDKP+P E+ +F+ IDRLF +VRPRKLL+MAIDGVAPRAKMNQQR+RR
Sbjct: 61 IHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARR 120
Query: 119 FRASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYY 178
FRA+K+ E E ++R E + +G LPP+ + FDSN ITPGT FM LS L YY
Sbjct: 121 FRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQV-FDSNVITPGTEFMATLSFALRYY 179
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLI 238
IH RLN+DPGWK IKVILSDANVPGEGEHKIM YIR + P ++PNT H L G DADLI
Sbjct: 180 IHVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLYGLDADLI 239
Query: 239 MLGLATHEPNFTIIRE-EFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFGN-- 295
ML LATHE +F+I+RE F P + C +CGQ GH +C G + D +
Sbjct: 240 MLSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLDNTEADVV 299
Query: 296 -QDNFIFVRLSVLREYLERELQ 316
+ + FV + +LREYLE ++Q
Sbjct: 300 VKKPYEFVNIWILREYLEHDMQ 321
>At1g04790.1 68414.m00475 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 634
Score = 35.9 bits (79), Expect = 0.036
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 243 ATHEPNFTIIREEFKPNKPRPCDVCGQLGH----EMKECTGTNPDASVVRSDPAFGNQDN 298
A++EP T+ R +P+ RP + L H ++ E ++P+ V R N +
Sbjct: 327 ASNEPEVTVNRSSGEPSSSRPPRIQNHLRHWHGTQVLEIEDSSPEVRVFRGPRRVENDVS 386
Query: 299 FIFVRLSVLREYLERELQESVLK 321
+ +R E L RELQE + +
Sbjct: 387 DVNIRQIEADEILARELQEQLYR 409
>At4g32620.1 68417.m04644 expressed protein predicted protein
T10M13.8, Arabidopsis thaliana
Length = 1544
Score = 32.3 bits (70), Expect = 0.45
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 112 NQQRSRRFRASKETQEKIEEVARIRNE--LQAKGAYLPPER--PKEAHFDSNCITPGTPF 167
N++ + ++S + +I +V+R +E L+A A + R P F SN +TPG+P
Sbjct: 234 NRRVGKEAKSSGDASGRISKVSREDDEENLEANAAIMLSSRFDPNCTQFPSNSVTPGSPS 293
Query: 168 MDRL 171
RL
Sbjct: 294 ASRL 297
>At1g69120.1 68414.m07909 floral homeotic protein APETALA1 (AP1) /
agamous-like MADS box protein (AGL7) identical to
SP|P35631 Floral homeotic protein APETALA1 (AGL7
protein) {Arabidopsis thaliana}
Length = 256
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 85 IDRLFRIVRPRK--LLYMAIDGVAPRAKMNQQRSRRFRASKETQEKIEEVARIRNELQAK 142
+D + +R RK L+Y +I+ + + K Q+++ + +EKI + + + Q +
Sbjct: 132 LDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILRAQQEQWDQQNQ 191
Query: 143 GAYLPPERPKEAH 155
G +PP P + H
Sbjct: 192 GHNMPPPLPPQQH 204
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 262 RPCDVCGQLGHEMKECTG 279
RPC CG++GH K+C G
Sbjct: 161 RPCYSCGEVGHLAKDCRG 178
>At4g25880.2 68417.m03722 pumilio/Puf RNA-binding
domain-containing protein contains Pfam profile:PF00806
Pumilio-family RNA binding domains
Length = 852
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 26 PTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIHP-CTHPEDK 68
P +++G + VD+ L G ++NL L G P THP K
Sbjct: 32 PPNMEGSFLAVDNLLSRQGGSVYNNLMLPRYGFEEPVTTHPSSK 75
>At4g25880.1 68417.m03721 pumilio/Puf RNA-binding
domain-containing protein contains Pfam profile:PF00806
Pumilio-family RNA binding domains
Length = 861
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 26 PTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIHP-CTHPEDK 68
P +++G + VD+ L G ++NL L G P THP K
Sbjct: 32 PPNMEGSFLAVDNLLSRQGGSVYNNLMLPRYGFEEPVTTHPSSK 75
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 29.9 bits (64), Expect = 2.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 262 RPCDVCGQLGHEMKECTGTNP 282
RPCD+CG H ++C ++P
Sbjct: 285 RPCDICGHTDHLTEDCLYSSP 305
>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 513
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 237 LIMLGLATHEPNFTIIREEFKPNKPRPCDVCGQ--LGHEMKEC 277
L ++ HE T IR E P PCDVCG+ G +M C
Sbjct: 79 LTIINAKIHEHTLTFIRRE----NPFPCDVCGRDDKGMDMYGC 117
>At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 807
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 153 EAHFDSNCITPGTPFMDRLSKCLHYYIHDRLNNDPGWKGIKVILS 197
E + S I P++ RL +C+ I +R + D G+ G+K +L+
Sbjct: 610 EIYIYSLYIVASLPYLSRLLQCMRRMIEER-SLDQGYNGVKYLLT 653
>At1g13570.1 68414.m01591 F-box family protein contains F-box domain
Pfam:PF00646 ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 416
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 230 LCGADAD--LIMLGLATHEPNFTIIREEFKPNKPRPCD 265
+C DAD L++L L TH PN ++ P +P P +
Sbjct: 293 VCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLE 330
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 264 CDVCGQLGHEMKEC---TGTNPDAS 285
C +CG+ GH + C TG NP S
Sbjct: 323 CGICGERGHNSRTCRKPTGVNPSCS 347
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 263 PCDVCGQLGHEMKECTGTNPDASVVRSDPAFGN 295
PC CG+ GH ++CT D V+S A G+
Sbjct: 238 PCYKCGKEGHWARDCT-VQSDTGPVKSTSAAGD 269
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 106 APRAKMNQQRSRRFRASKETQEKIEEVARIRNELQAKGA-YLPPE 149
A + K+ R++++ SKE QEK E+ +++ E + KG Y+ PE
Sbjct: 40 AEKRKLIFNRAKQY--SKEYQEKERELIQLKREAKLKGGFYVDPE 82
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 106 APRAKMNQQRSRRFRASKETQEKIEEVARIRNELQAKGA-YLPPE 149
A + K+ R++++ SKE QEK E+ +++ E + KG Y+ PE
Sbjct: 40 AEKRKLIFNRAKQY--SKEYQEKERELIQLKREAKLKGGFYVDPE 82
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 106 APRAKMNQQRSRRFRASKETQEKIEEVARIRNELQAKGA-YLPPE 149
A + K+ R++++ SKE QEK E+ +++ E + KG Y+ PE
Sbjct: 40 AEKRKLIFNRAKQY--SKEYQEKERELIQLKREAKLKGGFYVDPE 82
>At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY1)
similar to Ara4-interacting protein [Arabidopsis
thaliana] GI:13160609; contains Pfam profiles PF00789:
UBX domain, PF02809: Ubiquitin interaction motif
Length = 564
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 72 KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETQEKIEE 131
+ +DE + ++ D+ + +R + + + A +A + +++ + +E Q K+EE
Sbjct: 406 QQDDEYVASLQADRDKEMKSIRDAEARQLE-EETARKAFLEEEKKKE----EEAQRKLEE 460
Query: 132 VARIRNELQAKGAYLPPE 149
+ +L AK A LP E
Sbjct: 461 EQELERQLDAKEASLPKE 478
>At4g00980.1 68417.m00132 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 488
Score = 28.3 bits (60), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 264 CDVCGQLGHEMKECTGTNPD 283
CD CG+ GH K C G+ D
Sbjct: 438 CDNCGRKGHLAKHCWGSKSD 457
>At3g04810.2 68416.m00521 protein kinase, putative similar to
LSTK-1-like kinase [Lycopersicon esculentum]
GI:15637110; contains Pfam profile: PF00069 Eukaryotic
protein kinase domain
Length = 578
Score = 28.3 bits (60), Expect = 7.3
Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 20/184 (10%)
Query: 106 APRAKMNQQRSRRFR---ASKETQEKIEEVARIRNELQAKGAYL-PPERPKEAHF--DSN 159
+P MN R + AS E + + V + + ++G+Y PPE P + D
Sbjct: 402 SPDVSMNAPRIDKIEFPLASYEEEPFVPVVRGKKKKASSRGSYSPPPEPPLDCSITKDKF 461
Query: 160 CITPGTPFMDRLSKCLH---YYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQ 216
+ PG + K ++ Y+ DR + SD N + +RRQ
Sbjct: 462 TLEPGQNREGAIMKAVYEEDAYLEDRSES-----------SDQNATAGASSRASSGVRRQ 510
Query: 217 RAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKE 276
R P L G L ++ F P K P + L KE
Sbjct: 511 RFDPSSYQQRAEALEGLLEFSARLLQDERYDELNVLLRPFGPGKVSPRETAIWLSKSFKE 570
Query: 277 CTGT 280
T T
Sbjct: 571 TTTT 574
>At3g04810.1 68416.m00520 protein kinase, putative similar to
LSTK-1-like kinase [Lycopersicon esculentum]
GI:15637110; contains Pfam profile: PF00069 Eukaryotic
protein kinase domain
Length = 606
Score = 28.3 bits (60), Expect = 7.3
Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 20/184 (10%)
Query: 106 APRAKMNQQRSRRFR---ASKETQEKIEEVARIRNELQAKGAYL-PPERPKEAHF--DSN 159
+P MN R + AS E + + V + + ++G+Y PPE P + D
Sbjct: 430 SPDVSMNAPRIDKIEFPLASYEEEPFVPVVRGKKKKASSRGSYSPPPEPPLDCSITKDKF 489
Query: 160 CITPGTPFMDRLSKCLH---YYIHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQ 216
+ PG + K ++ Y+ DR + SD N + +RRQ
Sbjct: 490 TLEPGQNREGAIMKAVYEEDAYLEDRSES-----------SDQNATAGASSRASSGVRRQ 538
Query: 217 RAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKE 276
R P L G L ++ F P K P + L KE
Sbjct: 539 RFDPSSYQQRAEALEGLLEFSARLLQDERYDELNVLLRPFGPGKVSPRETAIWLSKSFKE 598
Query: 277 CTGT 280
T T
Sbjct: 599 TTTT 602
>At4g23040.1 68417.m03322 UBX domain-containing protein similar to
Ara4-interacting protein [Arabidopsis thaliana]
GI:13160609; contains Pfam profile PF00789: UBX domain
Length = 525
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 120 RASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYI 179
R +E + K+EE + +L +K A LP E P + N IT D ++
Sbjct: 410 RKEEEARRKVEEEQELERQLVSKEASLPQEPPAG---EENAITLQVRLPDGTRHGRRFFK 466
Query: 180 HDRLNN 185
D+L +
Sbjct: 467 SDKLQS 472
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 105 VAPRA-KMNQQRSRRFRASKETQEKIEEVARIRNELQAKGAY 145
V P A K+ + R + R KE ++K E R+R +A+ AY
Sbjct: 233 VEPNAHKLEEHRRKYDRLRKEREDKKAERDRLRRRAEAQAAY 274
>At3g45390.1 68416.m04900 lectin protein kinase family protein
contains Protein kinases ATP-binding region signature,
Prosite:PS00107 and Legume lectins beta-chain signature,
Prosite:PS00307
Length = 604
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 208 KIMDYIRRQRAQPDHDPNTQHVLCGADADLIM 239
K+M YI R +A PD P+T + G ++M
Sbjct: 533 KVMQYINRDQALPDFSPDTPGI--GVSTPMVM 562
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 258 PNKPR-PCDVCGQLGHEMKECT 278
P K R PC +CG L H K+C+
Sbjct: 184 PTKRRKPCFICGSLEHGAKQCS 205
>At3g14360.1 68416.m01817 lipase class 3 family protein low
similarity to Chain A, Lipase Ii From Rhizopus Niveus
GI:1942798; contains Pfam profile PF01764: Lipase
Length = 518
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 188 GWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHD 223
GW I L +PG +H + DY+ R PD++
Sbjct: 477 GWFRILFRLMGLVIPGLSDHCMTDYVNSVRLGPDNE 512
>At2g15550.1 68415.m01781 hypothetical protein similar to zinc
finger protein [Arabidopsis thaliana] GI:976277
Length = 589
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 223 DPNTQHVLCGADADL-IMLGLATHEPNFTIIREEFKPNKP-RPCDVCGQLGHEMKECTGT 280
DP+ +L AD+ + P+ T+++ + K R C C ++ HE+++C
Sbjct: 166 DPSKGRILISVTADVPLRFNKNAQLPSGTVVKVKLSYEKLFRWCSYCRRICHELEQCPLL 225
Query: 281 NPDASVVRS 289
+ + V S
Sbjct: 226 DAEQKAVLS 234
>At1g68560.1 68414.m07833 alpha-xylosidase (XYL1) identical to
alpha-xylosidase precursor GB:AAD05539 GI:4163997 from
[Arabidopsis thaliana]; contains Pfam profile PF01055:
Glycosyl hydrolases family 31; identical to cDNA
alpha-xylosidase precursor (XYL1) partial cds GI:4163996
Length = 915
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 46 VEFDNLYLDMNGIIH----PCTHPEDKPAPKDEDEMMVAIFEC 84
V D L++DMN + + CT PE K P E V +C
Sbjct: 432 VPIDGLWIDMNEVSNFCSGLCTIPEGKQCPSGEGPGWVCCLDC 474
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.139 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,486,056
Number of Sequences: 28952
Number of extensions: 380927
Number of successful extensions: 979
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 45
length of query: 322
length of database: 12,070,560
effective HSP length: 81
effective length of query: 241
effective length of database: 9,725,448
effective search space: 2343832968
effective search space used: 2343832968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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