GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000808-TA|BGIBMGA000808-PA|IPR004859|Putative 5-3
exonuclease
         (322 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   3.0  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   3.0  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   3.0  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   9.1  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 226 TQHVLCGADADLIMLGLATHEPNFTII 252
           T  +L GAD   + +G+A +   FT++
Sbjct: 238 THWILSGADPQKLAIGIAFYGHAFTLV 264


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 298 NFIFVRLSVLREYLERELQES 318
           N + VR  +L EYLE  +QE+
Sbjct: 203 NILRVRYQLLNEYLETLVQET 223


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 298 NFIFVRLSVLREYLERELQES 318
           N + VR  +L EYLE  +QE+
Sbjct: 203 NILRVRYQLLNEYLETLVQET 223


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 244 THEPNFTIIREEFKPNKPRPCDVCGQ 269
           T   N  I        +P  CD+CG+
Sbjct: 90  TKSYNLLIHERTHTDERPYSCDICGK 115


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 115 RSRRFRASKETQEKIEEVARIRN 137
           ++RR +  K+ +++IEE ++I N
Sbjct: 206 QNRRAKERKQNKKRIEEKSQIDN 228


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,579
Number of Sequences: 317
Number of extensions: 3781
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 322
length of database: 114,650
effective HSP length: 57
effective length of query: 265
effective length of database: 96,581
effective search space: 25593965
effective search space used: 25593965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)