GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000808-TA|BGIBMGA000808-PA|IPR004859|Putative 5-3
exonuclease
         (322 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    33   0.014
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    31   0.033
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     28   0.40 
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    26   1.6  
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    26   1.6  
AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein p...    24   5.0  
AY193729-1|AAO62002.1|  499|Anopheles gambiae cytochrome P450 CY...    24   6.6  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   8.7  

>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 32.7 bits (71), Expect = 0.014
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 252 IREEFKPN-KPRPCDVCGQLGHEMKECTGTNPDASVVRSDPA 292
           +RE  KP+ + R C  C + GH ++EC GTN  +  +R   A
Sbjct: 223 VREAPKPSAESRRCFRCLERGHMVRECQGTNRSSLCIRCGAA 264


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 31.5 bits (68), Expect = 0.033
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 110  KMNQQRSRRF-RASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDS---NCITPGT 165
            K+  +R   F        + I+ + +  +  +A  AYL P+ P+E + D    NC+ PG 
Sbjct: 1061 KVKNERCTLFTNCCNHISDAIDAIYKQLSRNEAAQAYLGPDNPEEPYLDGINYNCVAPGK 1120

Query: 166  PF 167
             F
Sbjct: 1121 RF 1122


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 259 NKPRPCDVCGQLGHEMKEC 277
           +KP  C  CGQ GH+ ++C
Sbjct: 71  SKPGACFFCGQPGHKKRDC 89


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 100  MAIDGVAPRAKMNQQRSRRFRASKETQEKIEEV 132
            +++DGVA   + N+ R+RR R  +   E+  EV
Sbjct: 1053 VSVDGVAELFRSNRGRARRTRRGRRRAEERVEV 1085



 Score = 24.2 bits (50), Expect = 5.0
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 169 DRLSKCLHYYIHDRLN--NDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPD--HDP 224
           +R  +CL     D  N  N   W+ I   L D  VP +  + + DY   +    D    P
Sbjct: 564 NRDKRCLLVVALDVRNAFNTASWQCIATALEDKGVPRQLRNILRDYFANRELVYDTADGP 623

Query: 225 NTQHVLCGADADLIM 239
            T+ V  G     I+
Sbjct: 624 VTRRVTAGVPQGSIL 638


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 259 NKPRPCDVCGQLGHEMKEC 277
           ++ + C  CGQ GH+++EC
Sbjct: 347 DRSKLCIKCGQEGHKIREC 365



 Score = 24.2 bits (50), Expect = 5.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 264 CDVCGQLGHEMKECTG 279
           C  C +LGH+  ECTG
Sbjct: 330 CFKCWKLGHKGFECTG 345


>AB090817-1|BAC57909.1|  344|Anopheles gambiae gag-like protein
           protein.
          Length = 344

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 257 KPNKPRPCDVCGQLGHEMKECTGT 280
           +P++   C  CG  GH+ + CT +
Sbjct: 292 EPDRSNLCWKCGLSGHKKQACTNS 315


>AY193729-1|AAO62002.1|  499|Anopheles gambiae cytochrome P450
           CYPm3r9 protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 222 HDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFKPNKPRP 263
           H P T+ VL    A +I +    H+P      E+F P +  P
Sbjct: 382 HVPGTKSVLEAGTAVMIPVHAIHHDPEVFPNPEQFDPERFSP 423


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 95  RKLLYMAIDGVAPRAKMNQQRSRRFRASKETQEKIEEVARIRNELQAK 142
           R+L   A+ G+A   +  QQR  + +A   +Q++ +E  + + +LQ K
Sbjct: 291 RQLQRQAV-GIAQHQQQQQQRQPQRQAVAGSQQQQQERMQQQQQLQRK 337


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 377,853
Number of Sequences: 2123
Number of extensions: 16865
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 11
length of query: 322
length of database: 516,269
effective HSP length: 64
effective length of query: 258
effective length of database: 380,397
effective search space: 98142426
effective search space used: 98142426
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)