Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000808-TA|BGIBMGA000808-PA|IPR004859|Putative 5-3
exonuclease
(322 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL158013-2|CAH71495.1| 950|Homo sapiens 5'-3' exoribonuclease 2... 512 e-145
AL117332-2|CAI19756.1| 950|Homo sapiens 5'-3' exoribonuclease 2... 512 e-145
AF064257-1|AAD55138.1| 950|Homo sapiens Dhm1-like protein protein. 506 e-143
AF152169-1|AAQ13577.1| 950|Homo sapiens DHP protein protein. 491 e-138
AY382900-1|AAR24369.1| 907|Homo sapiens 5'-3' exoribonuclease 2... 386 e-107
AK096177-1|BAC04718.1| 473|Homo sapiens protein ( Homo sapiens ... 256 6e-68
BC039314-1|AAH39314.1| 459|Homo sapiens XRN1 protein protein. 256 1e-67
AY137776-1|AAN11306.1| 1706|Homo sapiens DNA strand-exchange pro... 256 1e-67
BX640905-1|CAE45950.1| 1706|Homo sapiens hypothetical protein pr... 255 2e-67
BC048104-1|AAH48104.1| 459|Homo sapiens XRN1 protein protein. 254 2e-67
BC131775-1|AAI31776.1| 55|Homo sapiens XRN2 protein protein. 81 5e-15
Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of... 38 0.063
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein. 38 0.063
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein. 38 0.063
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten... 38 0.063
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ... 38 0.063
D83776-1|BAA12105.1| 1516|Homo sapiens KIAA0191 protein. 32 3.1
BC131734-1|AAI31735.1| 1645|Homo sapiens zinc finger, CCHC domai... 32 3.1
AL138849-1|CAI23476.1| 1644|Homo sapiens zinc finger, CCHC domai... 32 3.1
BC010013-1|AAH10013.1| 536|Homo sapiens MTF2 protein protein. 31 4.1
AJ010014-1|CAA08970.1| 593|Homo sapiens M96A protein protein. 31 4.1
AF086908-1|AAP97138.1| 282|Homo sapiens M96A-2 protein. 31 4.1
AF072814-1|AAC27618.1| 491|Homo sapiens PHD finger DNA binding ... 31 4.1
Z34522-2|CAA84279.1| 894|Homo sapiens Dsc1b precursor protein. 31 5.4
Z34522-1|CAA84278.1| 840|Homo sapiens Dsc1a precursor protein. 31 5.4
X72925-2|CAA51429.1| 829|Homo sapiens Dsc1a precursor protein. 31 5.4
X72925-1|CAA51428.1| 840|Homo sapiens Dsc1b precursor protein. 31 5.4
AL353678-6|CAH71518.1| 1495|Homo sapiens zinc finger, CCHC domai... 31 5.4
AL353678-5|CAH71519.1| 1259|Homo sapiens zinc finger, CCHC domai... 31 5.4
AL353678-2|CAH71515.1| 784|Homo sapiens zinc finger, CCHC domai... 31 5.4
AL353678-1|CAH71514.1| 395|Homo sapiens zinc finger, CCHC domai... 31 5.4
AL137849-4|CAI14920.1| 1495|Homo sapiens zinc finger, CCHC domai... 31 5.4
AL137849-3|CAI14921.1| 1259|Homo sapiens zinc finger, CCHC domai... 31 5.4
AL137849-2|CAI14919.1| 784|Homo sapiens zinc finger, CCHC domai... 31 5.4
AL137849-1|CAI14918.1| 395|Homo sapiens zinc finger, CCHC domai... 31 5.4
AL117354-5|CAI23502.1| 593|Homo sapiens metal response element ... 31 5.4
AL117354-4|CAI23503.1| 536|Homo sapiens metal response element ... 31 5.4
AK055948-1|BAB71052.1| 671|Homo sapiens protein ( Homo sapiens ... 31 5.4
AK023471-1|BAB14584.1| 395|Homo sapiens protein ( Homo sapiens ... 31 5.4
AF293358-2|AAG23425.1| 840|Homo sapiens desmocollin 1b protein. 31 5.4
AF293358-1|AAG23424.1| 894|Homo sapiens desmocollin 1a protein. 31 5.4
AB051498-1|BAB21802.1| 1090|Homo sapiens KIAA1711 protein protein. 31 5.4
BC139779-1|AAI39780.1| 606|Homo sapiens zinc finger protein 652... 31 7.2
BC021855-1|AAH21855.1| 371|Homo sapiens zinc finger and BTB dom... 31 7.2
AL021391-1|CAI18928.1| 1235|Homo sapiens structural maintenance ... 31 7.2
AL008718-2|CAI17945.1| 1235|Homo sapiens structural maintenance ... 31 7.2
AK127065-1|BAC86810.1| 645|Homo sapiens protein ( Homo sapiens ... 31 7.2
AK125736-1|BAC86266.1| 486|Homo sapiens Smc1l1). protein. 31 7.2
AJ504806-1|CAD43404.2| 1235|Homo sapiens SMC1beta protein protein. 31 7.2
AB033016-1|BAA86504.1| 174|Homo sapiens KIAA1190 protein protein. 31 7.2
AB023141-1|BAA76768.2| 617|Homo sapiens KIAA0924 protein protein. 31 7.2
BC025237-1|AAH25237.1| 352|Homo sapiens hematopoietic SH2 domai... 30 9.5
AY319652-1|AAQ81285.1| 352|Homo sapiens ALX protein. 30 9.5
AK027792-1|BAB55372.1| 352|Homo sapiens protein ( Homo sapiens ... 30 9.5
>AL158013-2|CAH71495.1| 950|Homo sapiens 5'-3' exoribonuclease 2
protein.
Length = 950
Score = 512 bits (1264), Expect = e-145
Identities = 239/318 (75%), Positives = 263/318 (82%), Gaps = 4/318 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV CVE+KP + +G + VD+S PNPN VEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH 180
ASKE E E R+R E+ AKG +LPPE KE FDSNCITPGT FMD L+KCL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKE-RFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIRRQRAQP+HDPNT H LCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFG---NQD 297
GLATHEPNFTIIREEFKPNKP+PC +C Q GHE+K+C G + + A +
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 298 NFIFVRLSVLREYLEREL 315
FIF+RL+VLREYLEREL
Sbjct: 300 EFIFLRLNVLREYLEREL 317
>AL117332-2|CAI19756.1| 950|Homo sapiens 5'-3' exoribonuclease 2
protein.
Length = 950
Score = 512 bits (1264), Expect = e-145
Identities = 239/318 (75%), Positives = 263/318 (82%), Gaps = 4/318 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV CVE+KP + +G + VD+S PNPN VEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH 180
ASKE E E R+R E+ AKG +LPPE KE FDSNCITPGT FMD L+KCL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKE-RFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIRRQRAQP+HDPNT H LCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFG---NQD 297
GLATHEPNFTIIREEFKPNKP+PC +C Q GHE+K+C G + + A +
Sbjct: 240 GLATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEG 299
Query: 298 NFIFVRLSVLREYLEREL 315
FIF+RL+VLREYLEREL
Sbjct: 300 EFIFLRLNVLREYLEREL 317
>AF064257-1|AAD55138.1| 950|Homo sapiens Dhm1-like protein protein.
Length = 950
Score = 506 bits (1249), Expect = e-143
Identities = 235/318 (73%), Positives = 261/318 (82%), Gaps = 4/318 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVPAFFRWLSRKYPS+IV CVE+KP + +G + VD+S PNPN VEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPR KMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRVKMNQQRSRRFR 120
Query: 121 ASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH 180
A K E E R+R E+ AKG +LPPE KE FDSNCITPGT FMD L+KCL YYI
Sbjct: 121 AIKRGMEAAVEKQRVREEILAKGGFLPPEEIKE-RFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIRRQRAQP+HDPNT H LCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFG---NQD 297
GLATHEPNFTIIREEFKPN+P+PC +C Q GHE+K+C G + + + A +
Sbjct: 240 GLATHEPNFTIIREEFKPNRPKPCGLCNQFGHEVKDCEGLSREKKGKHDELADSLPCAEG 299
Query: 298 NFIFVRLSVLREYLEREL 315
FIF+RL+VLREYLEREL
Sbjct: 300 EFIFLRLNVLREYLEREL 317
>AF152169-1|AAQ13577.1| 950|Homo sapiens DHP protein protein.
Length = 950
Score = 491 bits (1211), Expect = e-138
Identities = 229/318 (72%), Positives = 256/318 (80%), Gaps = 4/318 (1%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVPAFFRWLSRK PS+IV CVE+KP + +G + VD+S PNPN VEFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLSRKCPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPEDKPAPK+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPR KMNQQRSRRFR
Sbjct: 61 PCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRVKMNQQRSRRFR 120
Query: 121 ASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH 180
ASKE E E R+R E+ AKG +LPPE KE FDSNCITPGT FMD L+KCL YYI
Sbjct: 121 ASKEGMEAAVEKQRVREEILAKGGFLPPEEIKE-RFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIML 240
DRLNNDPGWK + VILSDA+ PGEGEHKIMDYIRRQRAQP+HDPNT H LCGADADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 GLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFG---NQD 297
PNFTIIREEFKPN+P+PC +C Q GHE+K+C G + + + A +
Sbjct: 240 AFPHMNPNFTIIREEFKPNRPKPCGLCNQFGHEVKDCEGLSREKKGKHDELADSLPCAEG 299
Query: 298 NFIFVRLSVLREYLEREL 315
FIF+RL+VLREY+EREL
Sbjct: 300 EFIFLRLNVLREYVEREL 317
>AY382900-1|AAR24369.1| 907|Homo sapiens 5'-3' exoribonuclease 2
isoform 3 protein.
Length = 907
Score = 386 bits (950), Expect = e-107
Identities = 184/253 (72%), Positives = 204/253 (80%), Gaps = 4/253 (1%)
Query: 66 EDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKET 125
E+K + K+EDEMMVAIFE IDRLF IVRPR+LLYMAIDGVAPRAKMNQQRSRRFRASKE
Sbjct: 23 EEKTSTKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEG 82
Query: 126 QEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIHDRLNN 185
E E R+R E+ AKG +LPPE KE FDSNCITPGT FMD L+KCL YYI DRLNN
Sbjct: 83 MEAAVEKQRVREEILAKGGFLPPEEIKE-RFDSNCITPGTEFMDNLAKCLRYYIADRLNN 141
Query: 186 DPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIMLGLATH 245
DPGWK + VILSDA+ PGEGEHKIMDYIRRQRAQP+HDPNT H LCGADADLIMLGLATH
Sbjct: 142 DPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATH 201
Query: 246 EPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFG---NQDNFIFV 302
EPNFTIIREEFKPNKP+PC +C Q GHE+K+C G + + A + FIF+
Sbjct: 202 EPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFL 261
Query: 303 RLSVLREYLEREL 315
RL+VLREYLEREL
Sbjct: 262 RLNVLREYLEREL 274
Score = 54.8 bits (126), Expect = 4e-07
Identities = 22/25 (88%), Positives = 24/25 (96%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQK 25
MGVPAFFRWLSRKYPS+IV CVE+K
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEK 25
>AK096177-1|BAC04718.1| 473|Homo sapiens protein ( Homo sapiens
cDNA FLJ38858 fis, clone MESAN2011627, highly similar to
5'-3' exoribonuclease 1. ).
Length = 473
Score = 256 bits (628), Expect = 6e-68
Identities = 129/269 (47%), Positives = 176/269 (65%), Gaps = 32/269 (11%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ + V + +P EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSE---------VVKEHQIP-----EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAP--KDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D +D++ IF ++ LFRI++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRTSDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYY 178
FR++KE ++KI++ KG LP E A FDSNCITPGT FM RL + L Y+
Sbjct: 102 FRSAKEAEDKIKKAIE-------KGETLPTE----ARFDSNCITPGTEFMARLHEHLKYF 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLI 238
++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDPNT+H L G DADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPNKPRPCDVC 267
MLGL +HE +F+++REE + + VC
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQRVC 239
>BC039314-1|AAH39314.1| 459|Homo sapiens XRN1 protein protein.
Length = 459
Score = 256 bits (626), Expect = 1e-67
Identities = 129/269 (47%), Positives = 176/269 (65%), Gaps = 32/269 (11%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ + V + +P EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSE---------VVKEHQIP-----EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D +D++ IF ++ LFRI++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYY 178
FR++KE ++KI++ KG LP E A FDSNCITPGT FM RL + L Y+
Sbjct: 102 FRSAKEAEDKIKKAIE-------KGETLPTE----ARFDSNCITPGTEFMARLHEHLKYF 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLI 238
++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDPNT+H L G DADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPNKPRPCDVC 267
MLGL +HE +F+++REE + + VC
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQRVC 239
>AY137776-1|AAN11306.1| 1706|Homo sapiens DNA strand-exchange
protein SEP1 protein.
Length = 1706
Score = 256 bits (626), Expect = 1e-67
Identities = 129/269 (47%), Positives = 176/269 (65%), Gaps = 32/269 (11%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ + V + +P EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSE---------VVKEHQIP-----EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D +D++ IF ++ LFRI++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYY 178
FR++KE ++KI++ KG LP E A FDSNCITPGT FM RL + L Y+
Sbjct: 102 FRSAKEAEDKIKKAIE-------KGETLPTE----ARFDSNCITPGTEFMARLHEHLKYF 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLI 238
++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDPNT+H L G DADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPNKPRPCDVC 267
MLGL +HE +F+++REE + + VC
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQRVC 239
>BX640905-1|CAE45950.1| 1706|Homo sapiens hypothetical protein
protein.
Length = 1706
Score = 255 bits (624), Expect = 2e-67
Identities = 129/269 (47%), Positives = 177/269 (65%), Gaps = 32/269 (11%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ + V + +P EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSE---------VVKEHQIP-----EFDNLYLDMNGIIH 41
Query: 61 PCTHP--EDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C+HP +D +D++ IF ++ LFRI++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNGDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYY 178
FR++KE ++KI++ KG LP E A FDSNCITPGT FM RL + L Y+
Sbjct: 102 FRSAKEAEDKIKKAIE-------KGETLPTE----ARFDSNCITPGTEFMARLHEHLKYF 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLI 238
++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDPNT+H L G DADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPNKPRPCDVC 267
MLGL +HE +F+++REE + + VC
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQRVC 239
>BC048104-1|AAH48104.1| 459|Homo sapiens XRN1 protein protein.
Length = 459
Score = 254 bits (623), Expect = 2e-67
Identities = 128/269 (47%), Positives = 176/269 (65%), Gaps = 32/269 (11%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVP F+RW+S +YP C+ + V + +P EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWISERYP-----CLSE---------VVKEHQIP-----EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D +D++ IF ++ LFRI++PRK+ +MA+DGVAPRAKMNQQR RR
Sbjct: 42 QCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRR 101
Query: 119 FRASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYY 178
FR++KE ++KI++ KG LP E A FDSNCITPGT FM +L + L Y+
Sbjct: 102 FRSAKEAEDKIKKAIE-------KGETLPTE----ARFDSNCITPGTEFMAKLHEHLKYF 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLI 238
++ +++ D W+G+ + S PGEGEHKIM++IR ++A+PDHDPNT+H L G DADLI
Sbjct: 151 VNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPNKPRPCDVC 267
MLGL +HE +F+++REE + + VC
Sbjct: 211 MLGLTSHEAHFSLLREEVRFGGKKTQRVC 239
>BC131775-1|AAI31776.1| 55|Homo sapiens XRN2 protein protein.
Length = 55
Score = 81.0 bits (191), Expect = 5e-15
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYL 53
MGVPAFFRWLSRK PS+IV CVE+KP + +G + VD+S PNPN VEFD +L
Sbjct: 1 MGVPAFFRWLSRKSPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDKTHL 53
>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 37.5 bits (83), Expect = 0.063
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 110 KMNQQRSRRFRASKET-QEKIEEVARIRNELQAKGAYLPPERPKEAHFDS---NCITPGT 165
++ ++R RF A E+ I+E+ + + + A+L PE P+E + D NC+ PG
Sbjct: 1061 QIKKERFDRFNACFESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGK 1120
Query: 166 PF--MDRLS 172
F MD LS
Sbjct: 1121 RFRPMDNLS 1129
>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
Length = 1233
Score = 37.5 bits (83), Expect = 0.063
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 110 KMNQQRSRRFRASKET-QEKIEEVARIRNELQAKGAYLPPERPKEAHFDS---NCITPGT 165
++ ++R RF A E+ I+E+ + + + A+L PE P+E + D NC+ PG
Sbjct: 1061 QIKKERFDRFNACFESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGK 1120
Query: 166 PF--MDRLS 172
F MD LS
Sbjct: 1121 RFRPMDNLS 1129
>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
Length = 1233
Score = 37.5 bits (83), Expect = 0.063
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 110 KMNQQRSRRFRASKET-QEKIEEVARIRNELQAKGAYLPPERPKEAHFDS---NCITPGT 165
++ ++R RF A E+ I+E+ + + + A+L PE P+E + D NC+ PG
Sbjct: 1061 QIKKERFDRFNACFESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGK 1120
Query: 166 PF--MDRLS 172
F MD LS
Sbjct: 1121 RFRPMDNLS 1129
>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural maintenance
of chromosomes 1-like 1 protein.
Length = 1233
Score = 37.5 bits (83), Expect = 0.063
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 110 KMNQQRSRRFRASKET-QEKIEEVARIRNELQAKGAYLPPERPKEAHFDS---NCITPGT 165
++ ++R RF A E+ I+E+ + + + A+L PE P+E + D NC+ PG
Sbjct: 1061 QIKKERFDRFNACFESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGK 1120
Query: 166 PF--MDRLS 172
F MD LS
Sbjct: 1121 RFRPMDNLS 1129
>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
chromosomes 1A protein.
Length = 1233
Score = 37.5 bits (83), Expect = 0.063
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 110 KMNQQRSRRFRASKET-QEKIEEVARIRNELQAKGAYLPPERPKEAHFDS---NCITPGT 165
++ ++R RF A E+ I+E+ + + + A+L PE P+E + D NC+ PG
Sbjct: 1061 QIKKERFDRFNACFESVATNIDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGK 1120
Query: 166 PF--MDRLS 172
F MD LS
Sbjct: 1121 RFRPMDNLS 1129
>D83776-1|BAA12105.1| 1516|Homo sapiens KIAA0191 protein.
Length = 1516
Score = 31.9 bits (69), Expect = 3.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C VCG++GH MK+C
Sbjct: 1159 ELAPND-RCCRVCGKIGHYMKDC 1180
>BC131734-1|AAI31735.1| 1645|Homo sapiens zinc finger, CCHC domain
containing 11 protein.
Length = 1645
Score = 31.9 bits (69), Expect = 3.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C VCG++GH MK+C
Sbjct: 1287 ELAPND-RCCRVCGKIGHYMKDC 1308
>AL138849-1|CAI23476.1| 1644|Homo sapiens zinc finger, CCHC domain
containing 11 protein.
Length = 1644
Score = 31.9 bits (69), Expect = 3.1
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C VCG++GH MK+C
Sbjct: 1287 ELAPND-RCCRVCGKIGHYMKDC 1308
>BC010013-1|AAH10013.1| 536|Homo sapiens MTF2 protein protein.
Length = 536
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 250 TIIREEFK--PNKPRPCDVCGQLGHEMKECTGTNPDASVVRSD 290
TI +EE+ PN+ CD CGQ H++ C + D+SV+ SD
Sbjct: 106 TICQEEYSEAPNEMVICDKCGQGYHQL--CHTPHIDSSVIDSD 146
>AJ010014-1|CAA08970.1| 593|Homo sapiens M96A protein protein.
Length = 593
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 250 TIIREEFK--PNKPRPCDVCGQLGHEMKECTGTNPDASVVRSD 290
TI +EE+ PN+ CD CGQ H++ C + D+SV+ SD
Sbjct: 106 TICQEEYSEAPNEMVICDKCGQGYHQL--CHTPHIDSSVIDSD 146
>AF086908-1|AAP97138.1| 282|Homo sapiens M96A-2 protein.
Length = 282
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 250 TIIREEFK--PNKPRPCDVCGQLGHEMKECTGTNPDASVVRSD 290
TI +EE+ PN+ CD CGQ H++ C + D+SV+ SD
Sbjct: 106 TICQEEYSEAPNEMVICDKCGQGYHQL--CHTPHIDSSVIDSD 146
>AF072814-1|AAC27618.1| 491|Homo sapiens PHD finger DNA binding
protein isoform 1 protein.
Length = 491
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 250 TIIREEFK--PNKPRPCDVCGQLGHEMKECTGTNPDASVVRSD 290
TI +EE+ PN+ CD CGQ H++ C + D+SV+ SD
Sbjct: 4 TICQEEYSEAPNEMVICDKCGQGYHQL--CHTPHIDSSVIDSD 44
>Z34522-2|CAA84279.1| 894|Homo sapiens Dsc1b precursor protein.
Length = 894
Score = 31.1 bits (67), Expect = 5.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 123 KETQEKIEEVARIRNELQAKGAYLPPERPKE--AHFDSNCITPGTPFMDRLSKCLHYYI 179
K T ++E + L+ K P+ PK H D+ IT TPF+DR KC Y +
Sbjct: 263 KVTATDLDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPFLDR-EKCDTYQL 320
>Z34522-1|CAA84278.1| 840|Homo sapiens Dsc1a precursor protein.
Length = 840
Score = 31.1 bits (67), Expect = 5.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 123 KETQEKIEEVARIRNELQAKGAYLPPERPKE--AHFDSNCITPGTPFMDRLSKCLHYYI 179
K T ++E + L+ K P+ PK H D+ IT TPF+DR KC Y +
Sbjct: 263 KVTATDLDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPFLDR-EKCDTYQL 320
>X72925-2|CAA51429.1| 829|Homo sapiens Dsc1a precursor protein.
Length = 829
Score = 31.1 bits (67), Expect = 5.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 123 KETQEKIEEVARIRNELQAKGAYLPPERPKE--AHFDSNCITPGTPFMDRLSKCLHYYI 179
K T ++E + L+ K P+ PK H D+ IT TPF+DR KC Y +
Sbjct: 263 KVTATDLDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPFLDR-EKCDTYQL 320
>X72925-1|CAA51428.1| 840|Homo sapiens Dsc1b precursor protein.
Length = 840
Score = 31.1 bits (67), Expect = 5.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 123 KETQEKIEEVARIRNELQAKGAYLPPERPKE--AHFDSNCITPGTPFMDRLSKCLHYYI 179
K T ++E + L+ K P+ PK H D+ IT TPF+DR KC Y +
Sbjct: 263 KVTATDLDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPFLDR-EKCDTYQL 320
>AL353678-6|CAH71518.1| 1495|Homo sapiens zinc finger, CCHC domain
containing 6 protein.
Length = 1495
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 1339 ELAPND-RCCRICGKIGHFMKDC 1360
>AL353678-5|CAH71519.1| 1259|Homo sapiens zinc finger, CCHC domain
containing 6 protein.
Length = 1259
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 1103 ELAPND-RCCRICGKIGHFMKDC 1124
>AL353678-2|CAH71515.1| 784|Homo sapiens zinc finger, CCHC domain
containing 6 protein.
Length = 784
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 628 ELAPND-RCCRICGKIGHFMKDC 649
>AL353678-1|CAH71514.1| 395|Homo sapiens zinc finger, CCHC domain
containing 6 protein.
Length = 395
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 239 ELAPND-RCCRICGKIGHFMKDC 260
>AL137849-4|CAI14920.1| 1495|Homo sapiens zinc finger, CCHC domain
containing 6 protein.
Length = 1495
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 1339 ELAPND-RCCRICGKIGHFMKDC 1360
>AL137849-3|CAI14921.1| 1259|Homo sapiens zinc finger, CCHC domain
containing 6 protein.
Length = 1259
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 1103 ELAPND-RCCRICGKIGHFMKDC 1124
>AL137849-2|CAI14919.1| 784|Homo sapiens zinc finger, CCHC domain
containing 6 protein.
Length = 784
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 628 ELAPND-RCCRICGKIGHFMKDC 649
>AL137849-1|CAI14918.1| 395|Homo sapiens zinc finger, CCHC domain
containing 6 protein.
Length = 395
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 239 ELAPND-RCCRICGKIGHFMKDC 260
>AL117354-5|CAI23502.1| 593|Homo sapiens metal response element
binding transcription factor 2 protein.
Length = 593
Score = 31.1 bits (67), Expect = 5.4
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 250 TIIREEFK--PNKPRPCDVCGQLGHEMKECTGTNPDASVVRSD 290
TI +EE+ PN+ CD CGQ H++ C + D SV+ SD
Sbjct: 106 TICQEEYSEAPNEMVICDKCGQGYHQL--CHTPHIDCSVIDSD 146
>AL117354-4|CAI23503.1| 536|Homo sapiens metal response element
binding transcription factor 2 protein.
Length = 536
Score = 31.1 bits (67), Expect = 5.4
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 250 TIIREEFK--PNKPRPCDVCGQLGHEMKECTGTNPDASVVRSD 290
TI +EE+ PN+ CD CGQ H++ C + D SV+ SD
Sbjct: 106 TICQEEYSEAPNEMVICDKCGQGYHQL--CHTPHIDCSVIDSD 146
>AK055948-1|BAB71052.1| 671|Homo sapiens protein ( Homo sapiens
cDNA FLJ31386 fis, clone NT2NE1000014, weakly similar to
Schizosaccharomyces pombe caffeine-induced death protein
1 ).
Length = 671
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 628 ELAPND-RCCRICGKIGHFMKDC 649
>AK023471-1|BAB14584.1| 395|Homo sapiens protein ( Homo sapiens
cDNA FLJ13409 fis, clone PLACE1001716. ).
Length = 395
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 239 ELAPND-RCCRICGKIGHFMKDC 260
>AF293358-2|AAG23425.1| 840|Homo sapiens desmocollin 1b protein.
Length = 840
Score = 31.1 bits (67), Expect = 5.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 123 KETQEKIEEVARIRNELQAKGAYLPPERPKE--AHFDSNCITPGTPFMDRLSKCLHYYI 179
K T ++E + L+ K P+ PK H D+ IT TPF+DR KC Y +
Sbjct: 263 KVTATDLDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPFLDR-EKCDTYQL 320
>AF293358-1|AAG23424.1| 894|Homo sapiens desmocollin 1a protein.
Length = 894
Score = 31.1 bits (67), Expect = 5.4
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 123 KETQEKIEEVARIRNELQAKGAYLPPERPKE--AHFDSNCITPGTPFMDRLSKCLHYYI 179
K T ++E + L+ K P+ PK H D+ IT TPF+DR KC Y +
Sbjct: 263 KVTATDLDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPFLDR-EKCDTYQL 320
>AB051498-1|BAB21802.1| 1090|Homo sapiens KIAA1711 protein protein.
Length = 1090
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 255 EFKPNKPRPCDVCGQLGHEMKEC 277
E PN R C +CG++GH MK+C
Sbjct: 934 ELAPND-RCCRICGKIGHFMKDC 955
>BC139779-1|AAI39780.1| 606|Homo sapiens zinc finger protein 652
protein.
Length = 606
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 244 THEPNFTIIREEFKPNKPRPCDVCGQ 269
T PN R KP PCDVCGQ
Sbjct: 451 TSRPNMKRHRRTHTGEKPYPCDVCGQ 476
>BC021855-1|AAH21855.1| 371|Homo sapiens zinc finger and BTB domain
containing 47 protein.
Length = 371
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 244 THEPNFTIIREEFKPNKPRPCDVCGQ 269
T PN R KP PCDVCGQ
Sbjct: 266 TSRPNMKRHRRTHTGEKPYPCDVCGQ 291
>AL021391-1|CAI18928.1| 1235|Homo sapiens structural maintenance of
chromosomes 1B protein.
Length = 1235
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 108 RAKMNQQRSRRFRASKETQEKIE-EVARIRNEL---QAKGAYLPPERPKEAHFDS---NC 160
R + Q + RR+ + E + + +I +L + A+L PE P+E + + NC
Sbjct: 1052 RQEFEQVKKRRYDLFTQCFEHVSISIDQIYKKLCRNNSAQAFLSPENPEEPYLEGISYNC 1111
Query: 161 ITPGTPF--MDRLS 172
+ PG F MD LS
Sbjct: 1112 VAPGKRFMPMDNLS 1125
>AL008718-2|CAI17945.1| 1235|Homo sapiens structural maintenance of
chromosomes 1B protein.
Length = 1235
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 108 RAKMNQQRSRRFRASKETQEKIE-EVARIRNEL---QAKGAYLPPERPKEAHFDS---NC 160
R + Q + RR+ + E + + +I +L + A+L PE P+E + + NC
Sbjct: 1052 RQEFEQVKKRRYDLFTQCFEHVSISIDQIYKKLCRNNSAQAFLSPENPEEPYLEGISYNC 1111
Query: 161 ITPGTPF--MDRLS 172
+ PG F MD LS
Sbjct: 1112 VAPGKRFMPMDNLS 1125
>AK127065-1|BAC86810.1| 645|Homo sapiens protein ( Homo sapiens
cDNA FLJ45122 fis, clone BRAWH3036247, weakly similar
to Zinc finger protein 228. ).
Length = 645
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 244 THEPNFTIIREEFKPNKPRPCDVCGQ 269
T PN R KP PCDVCGQ
Sbjct: 540 TSRPNMKRHRRTHTGEKPYPCDVCGQ 565
>AK125736-1|BAC86266.1| 486|Homo sapiens Smc1l1). protein.
Length = 486
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 108 RAKMNQQRSRRFRASKETQEKIE-EVARIRNEL---QAKGAYLPPERPKEAHFDS---NC 160
R + Q + RR+ + E + + +I +L + A+L PE P+E + + NC
Sbjct: 303 RQEFEQVKKRRYDLFTQCFEHVSISIDQIYKKLCRNNSAQAFLSPENPEEPYLEGISYNC 362
Query: 161 ITPGTPF--MDRLS 172
+ PG F MD LS
Sbjct: 363 VAPGKRFMPMDNLS 376
>AJ504806-1|CAD43404.2| 1235|Homo sapiens SMC1beta protein protein.
Length = 1235
Score = 30.7 bits (66), Expect = 7.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 108 RAKMNQQRSRRFRASKETQEKIE-EVARIRNEL---QAKGAYLPPERPKEAHFDS---NC 160
R + Q + RR+ + E + + +I +L + A+L PE P+E + + NC
Sbjct: 1052 RQEFEQVKKRRYDLFTQCFEHVSISIDQIYKKLCRNNSAQAFLSPENPEEPYLEGISYNC 1111
Query: 161 ITPGTPF--MDRLS 172
+ PG F MD LS
Sbjct: 1112 VAPGKRFMPMDNLS 1125
>AB033016-1|BAA86504.1| 174|Homo sapiens KIAA1190 protein protein.
Length = 174
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 244 THEPNFTIIREEFKPNKPRPCDVCGQ 269
T PN R KP PCDVCGQ
Sbjct: 69 TSRPNMKRHRRTHTGEKPYPCDVCGQ 94
>AB023141-1|BAA76768.2| 617|Homo sapiens KIAA0924 protein protein.
Length = 617
Score = 30.7 bits (66), Expect = 7.2
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 244 THEPNFTIIREEFKPNKPRPCDVCGQ 269
T PN R KP PCDVCGQ
Sbjct: 462 TSRPNMKRHRRTHTGEKPYPCDVCGQ 487
>BC025237-1|AAH25237.1| 352|Homo sapiens hematopoietic SH2 domain
containing protein.
Length = 352
Score = 30.3 bits (65), Expect = 9.5
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 23 EQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIF 82
+QKP + +L+ +P V++++L+L N + P AP++ V
Sbjct: 110 QQKPIEPRRELLTQPCRQKDPANVDYEDLFLYSNAVAEEAACPVS--APEEASPKPVLCH 167
Query: 83 ECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETQEKIEEVARIRNELQA 141
+ +R R A P++ + + R + +R+ K E+ + R+R +L++
Sbjct: 168 QSKERKPSAEMNRITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQ---RVRQQLKS 223
>AY319652-1|AAQ81285.1| 352|Homo sapiens ALX protein.
Length = 352
Score = 30.3 bits (65), Expect = 9.5
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 23 EQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIF 82
+QKP + +L+ +P V++++L+L N + P AP++ V
Sbjct: 110 QQKPIEPRRELLTQPCRQKDPANVDYEDLFLYSNAVAEEAACPVS--APEEASPKPVLCH 167
Query: 83 ECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETQEKIEEVARIRNELQA 141
+ +R R A P++ + + R + +R+ K E+ + R+R +L++
Sbjct: 168 QSKERKPSAEMNRITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQ---RVRQQLKS 223
>AK027792-1|BAB55372.1| 352|Homo sapiens protein ( Homo sapiens
cDNA FLJ14886 fis, clone PLACE1003723. ).
Length = 352
Score = 30.3 bits (65), Expect = 9.5
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 23 EQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIHPCTHPEDKPAPKDEDEMMVAIF 82
+QKP + +L+ +P V++++L+L N + P AP++ V
Sbjct: 110 QQKPIEPRRELLTQPCRQKDPANVDYEDLFLYSNAVAEEAACPVS--APEEASPKPVLCH 167
Query: 83 ECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETQEKIEEVARIRNELQA 141
+ +R R A P++ + + R + +R+ K E+ + R+R +L++
Sbjct: 168 QSKERKPSAEMNRITTKEATSSCPPKSPLGETRQKLWRSLKMLPERGQ---RVRQQLKS 223
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.321 0.139 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,379,893
Number of Sequences: 224733
Number of extensions: 2359019
Number of successful extensions: 5600
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 5534
Number of HSP's gapped (non-prelim): 79
length of query: 322
length of database: 73,234,838
effective HSP length: 90
effective length of query: 232
effective length of database: 53,008,868
effective search space: 12298057376
effective search space used: 12298057376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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