Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000808-TA|BGIBMGA000808-PA|IPR004859|Putative 5-3
exonuclease
(322 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical ... 468 e-132
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ... 240 8e-64
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 31 1.1
AL132863-9|CAB60576.2| 519|Caenorhabditis elegans Hypothetical ... 31 1.5
Z82259-4|CAB05128.2| 353|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 29 4.4
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 29 5.9
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 29 5.9
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 29 5.9
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 29 5.9
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 5.9
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 5.9
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 29 5.9
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 29 5.9
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 7.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 7.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 7.8
>AL110490-3|CAB54449.1| 892|Caenorhabditis elegans Hypothetical
protein Y48B6A.3 protein.
Length = 892
Score = 468 bits (1154), Expect = e-132
Identities = 215/317 (67%), Positives = 247/317 (77%), Gaps = 3/317 (0%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVPAFFRWL++KYP+ +V E + D DG V VD + PNPN EFDNLYLDMNGIIH
Sbjct: 1 MGVPAFFRWLTKKYPATVVNANEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIH 60
Query: 61 PCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFR 120
PCTHPED+PAPK+EDEM IFE IDR++ IVRPR+LLYMAIDGVAPRAKMNQQRSRRFR
Sbjct: 61 PCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR 120
Query: 121 ASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYYIH 180
ASKE EK + RN L A+G +PP++ +EAHFDSNCITPGTPFM RL+ L YYIH
Sbjct: 121 ASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYIH 180
Query: 181 DRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIML 240
DR+ ND W I++ILSDANVPGEGEHKIMDY+R+QR P HDPNT H LCGADADLIML
Sbjct: 181 DRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIML 240
Query: 241 GLATHEPNFTIIREEFKPNKPRPCDVCGQLGHEMKECTGTNPDASVVRSDPAFGNQ--DN 298
G+ATHE NF IIREEF PN+PR CD+CGQ GHE+KEC G + + D Q N
Sbjct: 241 GIATHEANFNIIREEFVPNQPRACDLCGQYGHELKECRGAENETD-LGDDYCKPEQREKN 299
Query: 299 FIFVRLSVLREYLEREL 315
FIF+R+ VLREYLE+EL
Sbjct: 300 FIFLRIPVLREYLEKEL 316
>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
protein Y39G8C.1 protein.
Length = 1195
Score = 240 bits (588), Expect = 8e-64
Identities = 129/268 (48%), Positives = 170/268 (63%), Gaps = 33/268 (12%)
Query: 1 MGVPAFFRWLSRKYPSVIVECVEQKPTDVDGQLVYVDSSLPNPNGVEFDNLYLDMNGIIH 60
MGVP F+RW S +YP C+ + V +S +P EFDNLYLDMNGIIH
Sbjct: 1 MGVPKFYRWTSERYP-----CLSE---------VINESQIP-----EFDNLYLDMNGIIH 41
Query: 61 PCTHPEDKPAPK--DEDEMMVAIFECIDRLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRR 118
C+HP D EDE+ V IF I+ L+ ++RP+K+ +MA+DGVAPRAKMNQQR+RR
Sbjct: 42 NCSHPNDDDVTFRITEDEIFVNIFAYIENLYNLIRPQKVFFMAVDGVAPRAKMNQQRARR 101
Query: 119 FRASKETQEKIEEVARIRNELQAKGAYLPPERPKEAHFDSNCITPGTPFMDRLSKCLHYY 178
F +++ ++ + E+ P EA FDSNCITPGT FM RL + L +
Sbjct: 102 FMSARTAHTQLAKALE-NGEIM----------PSEARFDSNCITPGTYFMTRLHQKLDDW 150
Query: 179 IHDRLNNDPGWKGIKVILSDANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLI 238
I + D W+G K+ILS NVPGEGEHKIMD+IR +RA +DPNT+H + G DADLI
Sbjct: 151 IKTKSATDSRWQGRKIILSGHNVPGEGEHKIMDFIRTERAGSSYDPNTRHCMYGLDADLI 210
Query: 239 MLGLATHEPNFTIIREEFKPN-KPRPCD 265
MLG+ +HEP+F+++REE N +PR D
Sbjct: 211 MLGIVSHEPHFSLLREEVTFNTRPRKND 238
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 245 HEPNFTIIREEFKPNKPRP-CDVCGQLGHEMKEC 277
HEP+ ++ + +K +P P C CG++GH C
Sbjct: 590 HEPSCSLAPKTWKRERPPPQCFTCGEMGHISTYC 623
>AL132863-9|CAB60576.2| 519|Caenorhabditis elegans Hypothetical
protein Y37H2A.7 protein.
Length = 519
Score = 30.7 bits (66), Expect = 1.5
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 64 HPEDKPAPKDEDEMMVAIFECID--RLFRIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRA 121
+P+ + + D+M+ IF+C+ LF I + + ID APR K + F
Sbjct: 76 NPKSRQLLELPDDMLNKIFDCVKPIELFPIRKVSRRFRDVIDRRAPRFKQIELNIANFCL 135
Query: 122 SKETQEKIEEVARIRNELQAKGAYLPPERPKEAH 155
S + E+V R+E + + + + E H
Sbjct: 136 SMNFDDDDEDVQYSRDEDEDEEGFTIEYKEHETH 169
>Z82259-4|CAB05128.2| 353|Caenorhabditis elegans Hypothetical
protein C28D4.4 protein.
Length = 353
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 198 DANVPGEGEHKIMDYIRRQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREEFK 257
D + G+ +IMDYI + RA+ D N L A A++I T+ + +K
Sbjct: 126 DPDYRGKDSMEIMDYIEKLRARNQSDNNVGTYLPPA-ANMIKKIYGTNNYQHIMYVSYYK 184
Query: 258 PNKPRPCDVCGQLGHEMKECTGTNPDASVVRSD 290
P++ + + G +K T PD +V+ D
Sbjct: 185 PDEMQIPEDLNLDGIFLKNATEV-PDMDIVKYD 216
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 92 VRPRKLLYMAIDGVAPRAKMNQQRSRRFRASKETQEK 128
+ PRK++ ++ P+AKM ++R R + K +E+
Sbjct: 227 IPPRKIIEKPVEKAPPKAKMTRKRMMRAKHEKRLREE 263
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 254 EEFKPNKPRPCDVCGQLGHEMKECT 278
E K +PR C C Q GH +ECT
Sbjct: 175 EPRKEREPRVCYNCQQPGHTSRECT 199
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 258 PNKPRPCDVCGQLGHEMKEC 277
P PR C CG+ GH EC
Sbjct: 258 PEPPRGCFNCGEQGHRSNEC 277
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 258 PNKPRPCDVCGQLGHEMKEC 277
P PR C CG+ GH EC
Sbjct: 469 PEPPRGCFNCGEQGHRSNEC 488
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 258 PNKPRPCDVCGQLGHEMKEC 277
P PR C CG+ GH EC
Sbjct: 469 PEPPRGCFNCGEQGHRSNEC 488
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 254 EEFKPNKPRPCDVCGQLGHEMKECT 278
E K +PR C C Q GH +ECT
Sbjct: 175 EPRKEREPRVCYNCQQPGHTSRECT 199
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 258 PNKPRPCDVCGQLGHEMKEC 277
P PR C CG+ GH EC
Sbjct: 258 PEPPRGCFNCGEQGHRSNEC 277
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 251 IIREEFKPNKPR-PCDVCGQLGHEMKEC 277
I +E KP PR PC C QLGH +C
Sbjct: 581 ISKECDKPKVPRFPCRNCEQLGHFASDC 608
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 257 KPNKPR-PCDVCGQLGHEMKEC 277
+P PR PC CGQ GH K+C
Sbjct: 633 QPKVPRGPCRNCGQEGHFAKDC 654
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 260 KPRPCDVCGQLGHEMKEC 277
+PR C CG+ GH KEC
Sbjct: 568 RPRGCHNCGEEGHISKEC 585
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 251 IIREEFKPNKPR-PCDVCGQLGHEMKEC 277
I +E KP PR PC C QLGH +C
Sbjct: 581 ISKECDKPKVPRFPCRNCEQLGHFASDC 608
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 257 KPNKPR-PCDVCGQLGHEMKEC 277
+P PR PC CGQ GH K+C
Sbjct: 633 QPKVPRGPCRNCGQEGHFAKDC 654
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 260 KPRPCDVCGQLGHEMKEC 277
+PR C CG+ GH KEC
Sbjct: 568 RPRGCHNCGEEGHISKEC 585
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 254 EEFKPNKPRPCDVCGQLGHEMKECT 278
E K +PR C C Q GH +ECT
Sbjct: 175 EPRKEREPRVCYNCQQPGHTSRECT 199
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 258 PNKPRPCDVCGQLGHEMKEC 277
P PR C CG+ GH EC
Sbjct: 258 PEPPRGCFNCGEQGHRSNEC 277
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 258 PNKPRPCDVCGQLGHEMKEC 277
P PR C CG+ GH EC
Sbjct: 469 PEPPRGCFNCGEQGHRSNEC 488
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 23 EQKPTDVDGQLVYVDSS---LPNPNGVEFDNLYLDMNG-IIHPCTHPEDKPAPKDEDEMM 78
E KP DGQL+ D+S + G + L D NG I+P P+ P P D +
Sbjct: 2431 EGKPMGPDGQLLPTDASGNYIYPVTGPNDEVLPTDANGNPIYPVVGPDGTPLPTDASGAI 2490
Query: 79 V 79
V
Sbjct: 2491 V 2491
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 23 EQKPTDVDGQLVYVDSS---LPNPNGVEFDNLYLDMNG-IIHPCTHPEDKPAPKDEDEMM 78
E KP DGQL+ D+S + G + L D NG I+P P+ P P D +
Sbjct: 2494 EGKPMGPDGQLLPTDASGNYIYPVTGPNDEVLPTDANGNPIYPVVGPDGTPLPTDASGAI 2553
Query: 79 V 79
V
Sbjct: 2554 V 2554
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.3 bits (60), Expect = 7.8
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 23 EQKPTDVDGQLVYVDSS---LPNPNGVEFDNLYLDMNG-IIHPCTHPEDKPAPKDEDEMM 78
E KP DGQL+ D+S + G + L D NG I+P P+ P P D +
Sbjct: 2494 EGKPMGPDGQLLPTDASGNYIYPVTGPNDEVLPTDANGNPIYPVVGPDGTPLPTDASGAI 2553
Query: 79 V 79
V
Sbjct: 2554 V 2554
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.139 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,047,735
Number of Sequences: 27539
Number of extensions: 420860
Number of successful extensions: 1194
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1155
Number of HSP's gapped (non-prelim): 90
length of query: 322
length of database: 12,573,161
effective HSP length: 81
effective length of query: 241
effective length of database: 10,342,502
effective search space: 2492542982
effective search space used: 2492542982
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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