GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000808-TA|BGIBMGA000808-PA|IPR004859|Putative 5-3
exonuclease
         (322 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   2.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   4.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.2  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 7/54 (12%)

Query: 31  GQLVYVDSSLPNPNGVEFDNLYLDMNGI-----IHPCTHPEDKPAPKDEDEMMV 79
           G+L +  +S+ + NG++F NL +D N +     + P + PE++      DE M+
Sbjct: 312 GELGHCTASVMDENGLQFFNL-IDQNAVGCWNSLLPYS-PENQAVVARHDEAMI 363


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 60  HPCTHPEDKPAPKDEDEMMVAIFECIDRLFRIVRPRKLL 98
           HP  HP + P P+ E  +  A F   + L  I++  K++
Sbjct: 466 HP--HPPETPGPQVETILQNACFCARNELMMILKEIKII 502


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 264 CDVCGQLGHEMKEC-TGT-NP 282
           C  CG + H +K C  GT NP
Sbjct: 78  CGACGDIAHTVKYCPKGTKNP 98


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 266 VCGQLGHEMKECTGTNPDASVVRSDPAFGNQD-NFIFVRLSVLR 308
           + G+L  +++E        S+V S P F N D NF+   ++ LR
Sbjct: 430 ILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLR 473


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 266 VCGQLGHEMKECTGTNPDASVVRSDPAFGNQD-NFIFVRLSVLR 308
           + G+L  +++E        S+V S P F N D NF+   ++ LR
Sbjct: 398 ILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLR 441


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,141
Number of Sequences: 429
Number of extensions: 4835
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 322
length of database: 140,377
effective HSP length: 58
effective length of query: 264
effective length of database: 115,495
effective search space: 30490680
effective search space used: 30490680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)