Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000807-TA|BGIBMGA000807-PA|IPR006329|AMP deaminase,
IPR001365|Adenosine/AMP deaminase
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...   557   e-159
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    41   6e-04
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    35   0.031
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    29   2.1  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    28   3.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   4.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   8.3  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score =  557 bits (1375), Expect = e-159
 Identities = 266/524 (50%), Positives = 356/524 (67%), Gaps = 9/524 (1%)

Query: 130 GVVAVYRSEGDAASGRPLPYRTVKFKQYVDDMGKLSDMVADGPLKSFCFRRLSYLKSKFK 189
           G+  VY ++    +G P  +     + Y  D+  L    +DGP KSF FRRL YL+ ++ 
Sbjct: 245 GIFQVYENDSAYIAGTP-SFHIPTIRDYYIDLEFLLSASSDGPSKSFSFRRLQYLEGRWN 303

Query: 190 MHVLLNELHELALQKAVPHRDFYNIRKVDTHIHAASCMNQKHLLRFIKRTLRQNAHEVVA 249
           M++LLNE  ELA  K VPHRDFYN+RKVDTH+H ++  NQKHLLRFIK  LR+  +E V 
Sbjct: 304 MYMLLNEYQELADTKKVPHRDFYNVRKVDTHVHHSALANQKHLLRFIKAKLRKCPNEKVI 363

Query: 250 LQRGVPMTLKSVFEEMQLDAYDLNVDILDVHADRNTFHRFDKFNAKYNPVGESRLREVFL 309
            + G  +TL+ VF+ ++L +YDL++D LD+HA  +TFHRFDKFN KYNP+GESRLR +FL
Sbjct: 364 WRDGKFLTLQEVFDSLKLTSYDLSIDTLDMHAHTDTFHRFDKFNLKYNPIGESRLRTIFL 423

Query: 310 KTDNYMNGTYFANIIKEVMSDFAENKYTYSEPRISVYCKSSSEWSRLASWAVRNDVHSPH 369
           KTDN +NG Y A + KEV +D    KY  +E RIS+Y ++  EW +LA+W + N++ SP+
Sbjct: 424 KTDNDINGRYLAELTKEVFTDLRTQKYQMAEYRISIYGRNREEWDKLAAWIIDNELFSPN 483

Query: 370 VRWLVQVPRLYDIYRINKLLKNFQQFLSNLFDPLFEVSIDPSSNPELHKFLAHVIGFDSV 429
           VRWL+QVPRLYD+Y+ + +++ F++ + N+F+PLFEV+ DP ++P+LH FL  VIGFDSV
Sbjct: 484 VRWLIQVPRLYDVYKKSGIVETFEEVVRNVFEPLFEVTKDPRTHPKLHVFLQRVIGFDSV 543

Query: 430 DDESKPEIPNLSEHMRTPEEWNDXXXXXXXXXXXXXXXXXVTLNELRKEQGLNTFVLRPH 489
           DDESKPE     +    P+ W+                   +LN  RK +G NTFVLRPH
Sbjct: 544 DDESKPERRTFRK-FPYPKHWDINLNPPYSYWLYYMYANMTSLNSWRKIRGFNTFVLRPH 602

Query: 490 CGEAGPAAHLSAGFLLAENISHGLILRKVPVXXXXXXXXXXXXXMSPLSNNSLFLNYHRN 549
           CGEAG   HL++ FLL+  I+HG++LRKVP              MSPLSNN+LFL Y +N
Sbjct: 603 CGEAGDTDHLASAFLLSHGINHGILLRKVPFLQYLWYLDQIPIAMSPLSNNALFLAYDKN 662

Query: 550 PLPEYFARGLRVTLSTDDPLQFHFTREPLMEEYSIAAQAWKLSSCDMCELARNSVLMSGF 609
           P   YF RGL V+LSTDDPLQF FTREPL+EEY++AAQ +KLS+ DMCELARNSVL SGF
Sbjct: 663 PFLTYFKRGLNVSLSTDDPLQFAFTREPLIEEYAVAAQIYKLSAVDMCELARNSVLQSGF 722

Query: 610 PHEMKQYWLGAQYVHEGPAGNDITKTNVPDVRISFRHETLLDEL 653
             ++K+ WLG  +        DI +TNVP +R+++R  TL  E+
Sbjct: 723 ERQLKERWLGVDF-------QDIDRTNVPIIRLAYRALTLTQEI 759


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 25/114 (21%), Positives = 50/114 (43%), Gaps = 2/114 (1%)

Query: 507 ENISHGLILRKVPVXXXXXXXXXXXXXMSPLSNNSLFLNYHRNPLPEYFARGLRVTLSTD 566
           E I HG+ +   P              + P SN  ++    +  +      GL+VT+++D
Sbjct: 219 ERIDHGINILDDPELIKLALERNIPFTVCPFSNEIVYPGKAQPEIRIMLDTGLKVTINSD 278

Query: 567 DPLQFHFTREPLMEEYSIAAQAWKLSSCDMCELARNSVLMSGFPHEMKQYWLGA 620
           DP   H     + E +++A +   L+  ++ ++ RNS   +    E + ++L A
Sbjct: 279 DPAYMHCFY--ITENFNLAQKGASLTKKELVQICRNSFEAAWISEEKRNHYLEA 330


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 535 SPLSNNSLFLNYHRNPLPEY-FARGLRVTLSTDDPLQFHFTREPLMEEYSIAAQAWKLS- 592
           S + N  + L Y R P+P+Y F +GL  TL   +    H +++  +E + +     K S 
Sbjct: 194 SDICNEQIELEYKRKPIPDYDFMKGLETTL--QELYVEHQSKKRRLELFQLTNNHQKNSE 251

Query: 593 SCDMCEL 599
           +C+MC L
Sbjct: 252 ACEMCRL 258


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 27   YISLGY-DKRLVLELMVPIEELIRSATLLVEAL 58
            YIS GY  +RL ++  VP+   ++ A L++EA+
Sbjct: 1485 YISSGYKSRRLAIDYSVPLVTNVKCAKLMIEAI 1517


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 214 IRKVDTHIHAASCMNQKHLLRFIKRTLRQNAHEVVALQRGVPMTLKSVFEEMQ--LDAYD 271
           + K D +    S + +   +  ++R  R N +E+  L     M LKS+ EE+    +A D
Sbjct: 564 VSKSDVYNAITSAVKRDVFINRLQRLRRMNLYEITFLSMKQKMQLKSLREEIDNTKEALD 623

Query: 272 LNV 274
           L+V
Sbjct: 624 LSV 626


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 175 SFCFRRLSYLKSKFKMHVLLNE-----LHELALQKAVPHRDFYNIRKVDTHIHAA 224
           ++ F R  Y+K+   M  LLNE     +H   +   + +RD YNI  +  HI+AA
Sbjct: 764 TYTFSRSIYVKA---MRDLLNEAKIQIMHACLIDVCLKNRDRYNIFDIAFHINAA 815


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 387  KLLKNFQQFLSNLFDPLFE---VSIDPSSNPELHKFLAHVIGFDSVDDESKPEI 437
            +L  NF  F ++ ++P  E   V +  S NP   K   HV   + +D    P++
Sbjct: 1730 ELFMNFYNFSNSHWEPFLEPWKVGVHISRNPNTSKTAVHVFSREKLDLVITPQL 1783


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,015
Number of Sequences: 5004
Number of extensions: 129641
Number of successful extensions: 292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 13
length of query: 662
length of database: 2,362,478
effective HSP length: 77
effective length of query: 585
effective length of database: 1,977,170
effective search space: 1156644450
effective search space used: 1156644450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)