Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000806-TA|BGIBMGA000806-PA|IPR001365|Adenosine/AMP
deaminase, IPR006329|AMP deaminase
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                   220   4e-57
SB_32825| Best HMM Match : A_deaminase (HMM E-Value=0.68)             177   4e-44
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                   112   9e-25
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   4.5  

>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score =  220 bits (537), Expect = 4e-57
 Identities = 133/357 (37%), Positives = 193/357 (54%), Gaps = 46/357 (12%)

Query: 29  PYEVPQFPIEQIEKKLLIQRQLNVKAAECAQSVRXXXXXXXXXXXXXXXXXRLRVPDDDD 88
           P+E+P+ PIEQ+E K   + ++N++    ++ +R                    +     
Sbjct: 99  PFEIPEHPIEQLELK---KEEINLERQH-SKIMRGNSVSGPQLAGERSPSSTESLLGYGG 154

Query: 89  DEIILPHFQRVAISGEDTSGVPLEDLQQASSYLVQALEMRKRYMEMSQQSFSPITARFIR 148
               +P+F RV+ISG +TSGVP+E+L+QA+  LV+AL +R +YM +S QS    T+  + 
Sbjct: 155 SLDSMPYFHRVSISGGNTSGVPVEELKQAAKLLVEALFIRFKYMSLSLQSICSATSTALS 214

Query: 149 SMDADAVAN--------HVPVKVPNKHIADHIVHPPFRDKDPWECPMPEPKGYSIRLNRG 200
           ++  D            HVP +  N HI D      F  + P++C +    GY++ +  G
Sbjct: 215 TVHDDYKLEKFYGDRGMHVPDEPENTHITD------FSKESPFDCEVQGDCGYAVEMIDG 268

Query: 201 VFNMYRQGPNGEER----LPYEYITLAQYIQDMNTMCNMIADGPL--------------- 241
           V  +     + + R      + +  L ++ +D N +  +   GP+               
Sbjct: 269 VIQVISCRRDHKNRPSNCTVHPFPDLQEFFEDQNILLALSTHGPMVFLACFLFLIIAGNV 328

Query: 242 ---------KSFCYRRLSYLSSKFQLHVLLNELRELASQKAVPHRDFYNIRKVDTHIHAA 292
                    KSF YRRL YL S++ LH LLNE++ELA+ K VPHRDFYN+RKVDTH+HAA
Sbjct: 329 TKVDLAFFSKSFAYRRLKYLESRYSLHTLLNEMKELAAMKEVPHRDFYNVRKVDTHVHAA 388

Query: 293 SCMNQKHLLRFIKKTLKTHADEVVTLHKGTPMTLRSVFQSMNLSTYDLTVDMLDVHA 349
           SCMNQKHLLRFIKK +K   DE V +H G   TLR VF  +NL+ YDL+VD LDVHA
Sbjct: 389 SCMNQKHLLRFIKKKVKCEGDEPVIMHDGKEATLREVFAMLNLTPYDLSVDTLDVHA 445


>SB_32825| Best HMM Match : A_deaminase (HMM E-Value=0.68)
          Length = 123

 Score =  177 bits (430), Expect = 4e-44
 Identities = 76/121 (62%), Positives = 100/121 (82%)

Query: 369 ESRLREVFLKTDNYMNGKYFARIIKEVASDLEESKYQNAELRLSVYGKSPGEWAKLAKWA 428
           ESRLRE+FLKTDNY++G+YFA+++KEV  DLEESKYQNAE R+S+YG+S  EW  LAKWA
Sbjct: 2   ESRLREIFLKTDNYIDGRYFAQLMKEVMVDLEESKYQNAEPRISIYGRSINEWDALAKWA 61

Query: 429 IQYDVHSNNVRWLIQIPRLYDIFKSNKIMNDFHEFLNNIFQPLFEVTNDPNSNIELHKFL 488
           + +DV S NVRW+IQIPRL+D++++  ++ +F E L N+F PLFE T +P S+ ELHKFL
Sbjct: 62  VNHDVFSENVRWVIQIPRLFDVYRAKGLVKNFQEMLENLFMPLFEATINPQSHPELHKFL 121

Query: 489 T 489
           T
Sbjct: 122 T 122


>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score =  112 bits (270), Expect = 9e-25
 Identities = 56/81 (69%), Positives = 64/81 (79%), Gaps = 3/81 (3%)

Query: 656 EPLMEEYSIAAQVWKLSSCDMCELARNSVLMSGFPHEMKQYWLGPNYTKEGVAGNDITRT 715
           EPLMEEYSIAAQVWKLS CDM ELARNSVLMSGF  E+K+ W+G +   EG   NDIT+T
Sbjct: 1   EPLMEEYSIAAQVWKLSPCDMAELARNSVLMSGFEEEVKRQWIGCD-KLEG--SNDITKT 57

Query: 716 NVPDIRISFRHETILDELTNI 736
           NVP+IR+ FR ET+L EL  I
Sbjct: 58  NVPNIRVCFRQETLLQELETI 78


>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1880

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 279  FYNIRKVDTHIHAASCMNQKHLLRFIKKTLKTHADEVVTLHKGTPMTLRSVFQSMNLSTY 338
            F+NI  +DT        +     + I +TLK H++ +  +H  T   L S F    +   
Sbjct: 1788 FHNIASIDTSFEEMDSNSAYDSTQLISETLKEHSNNLSIMHFNTHSMLSS-FNEFQVLVS 1846

Query: 339  DLTVDML 345
             L +D++
Sbjct: 1847 QLPMDII 1853


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,927,595
Number of Sequences: 59808
Number of extensions: 1048002
Number of successful extensions: 1960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1952
Number of HSP's gapped (non-prelim): 6
length of query: 753
length of database: 16,821,457
effective HSP length: 88
effective length of query: 665
effective length of database: 11,558,353
effective search space: 7686304745
effective search space used: 7686304745
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)