Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000806-TA|BGIBMGA000806-PA|IPR001365|Adenosine/AMP
deaminase, IPR006329|AMP deaminase
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate ... 570 e-163
At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate ... 570 e-163
At3g06920.1 68416.m00821 pentatricopeptide (PPR) repeat-containi... 29 8.6
At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containi... 29 8.6
>At2g38280.2 68415.m04702 AMP deaminase, putative / myoadenylate
deaminase, putative similar to SP|P15274 AMP deaminase
(EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00962:
Adenosine/AMP deaminase
Length = 839
Score = 570 bits (1408), Expect = e-163
Identities = 273/551 (49%), Positives = 357/551 (64%), Gaps = 16/551 (2%)
Query: 188 PEPKG-YSIRLNRGVFNMYRQGPNGEERLPYEYITLAQYIQDMNTMCNMIADGPLKSFCY 246
P+ K + + GV +++ E+ P T + D++ + +IA G +++ C+
Sbjct: 292 PQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATA--FFTDLHHVLKVIAAGNIRTLCH 349
Query: 247 RRLSYLSSKFQLHVLLNELRELASQKAVPHRDFYNIRKVDTHIHAASCMNQKHLLRFIKK 306
RRL L KF LH++LN +E +QK+ PHRDFYN+RKVDTH+H ++CMNQKHLLRFIK
Sbjct: 350 RRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKS 409
Query: 307 TLKTHADEVVTLHKGTPMTLRSVFQSMNLSTYDLTVDMLDVHADRNTFHRFDKFNAKYNP 366
L+ DEVV GT +TLR VF+S++L+ YDL VD+LDVHAD++TFHRFDKFN KYNP
Sbjct: 410 KLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNP 469
Query: 367 IGESRLREVFLKTDNYMNGKYFARIIKEVASDLEESKYQNAELRLSVYGKSPGEWAKLAK 426
G+SRLRE+FLK DN + G++ I K+V SDLE SKYQ AE R+S+YG+ EW +LA
Sbjct: 470 CGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLAS 529
Query: 427 WAIQYDVHSNNVRWLIQIPRLYDIFKSNKIMNDFHEFLNNIFQPLFEVTNDPNSNIELHK 486
W + D++S NV WLIQ+PRLY+I+K I+ F L+NIF PLFE T DP+S+ +LH
Sbjct: 530 WIVNNDLYSENVVWLIQLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVDPDSHPQLHV 589
Query: 487 FLTHVIGFDSVDDESKPENPMLDTEVKSPEEWDDXXXXXXXXXXXXXXXXXTVLNHFRKG 546
FL V+GFD VDDESKPE + +P +W + VLN R+
Sbjct: 590 FLKQVVGFDLVDDESKPER-RPTKHMPTPAQWTNAFNPAFSYYVYYCYANLYVLNKLRE- 647
Query: 547 PKLKIFYDTPREQGLNTFVLRPHCGEAGPVQHLVCGLLLAENISHGLLLRKVPVXXXXXX 606
+G+ T LRPH GEAG + HL L +I+HG+ LRK PV
Sbjct: 648 -----------SKGMTTITLRPHSGEAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYY 696
Query: 607 XXXXXXXMSPLSNNSLFLNYHRNPLPEFLARGLCITLSTDDPLQFHFTKEPLMEEYSIAA 666
MSPLSNNSLFL+YHRNP P F RGL ++LSTDDPLQ H TKEPL+EEYSIAA
Sbjct: 697 LAQIGLAMSPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAA 756
Query: 667 QVWKLSSCDMCELARNSVLMSGFPHEMKQYWLGPNYTKEGVAGNDITRTNVPDIRISFRH 726
VWKLS+CD+CE+ARNSV SGF H +K +W+G +Y K G GNDI +TNVP IR+ FR
Sbjct: 757 SVWKLSACDLCEIARNSVYQSGFSHALKSHWIGKDYYKRGPDGNDIHKTNVPHIRVEFRD 816
Query: 727 ETILDELTNIF 737
+E+ ++
Sbjct: 817 TIWKEEMQQVY 827
>At2g38280.1 68415.m04701 AMP deaminase, putative / myoadenylate
deaminase, putative similar to SP|P15274 AMP deaminase
(EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces
cerevisiae}; contains Pfam profile PF00962:
Adenosine/AMP deaminase
Length = 839
Score = 570 bits (1408), Expect = e-163
Identities = 273/551 (49%), Positives = 357/551 (64%), Gaps = 16/551 (2%)
Query: 188 PEPKG-YSIRLNRGVFNMYRQGPNGEERLPYEYITLAQYIQDMNTMCNMIADGPLKSFCY 246
P+ K + + GV +++ E+ P T + D++ + +IA G +++ C+
Sbjct: 292 PQGKSDHCFEMQDGVVHVFANKDAKEDLFPVADATA--FFTDLHHVLKVIAAGNIRTLCH 349
Query: 247 RRLSYLSSKFQLHVLLNELRELASQKAVPHRDFYNIRKVDTHIHAASCMNQKHLLRFIKK 306
RRL L KF LH++LN +E +QK+ PHRDFYN+RKVDTH+H ++CMNQKHLLRFIK
Sbjct: 350 RRLVLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKS 409
Query: 307 TLKTHADEVVTLHKGTPMTLRSVFQSMNLSTYDLTVDMLDVHADRNTFHRFDKFNAKYNP 366
L+ DEVV GT +TLR VF+S++L+ YDL VD+LDVHAD++TFHRFDKFN KYNP
Sbjct: 410 KLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNP 469
Query: 367 IGESRLREVFLKTDNYMNGKYFARIIKEVASDLEESKYQNAELRLSVYGKSPGEWAKLAK 426
G+SRLRE+FLK DN + G++ I K+V SDLE SKYQ AE R+S+YG+ EW +LA
Sbjct: 470 CGQSRLREIFLKQDNLIQGRFLGEITKQVFSDLEASKYQMAEYRISIYGRKMSEWDQLAS 529
Query: 427 WAIQYDVHSNNVRWLIQIPRLYDIFKSNKIMNDFHEFLNNIFQPLFEVTNDPNSNIELHK 486
W + D++S NV WLIQ+PRLY+I+K I+ F L+NIF PLFE T DP+S+ +LH
Sbjct: 530 WIVNNDLYSENVVWLIQLPRLYNIYKDMGIVTSFQNILDNIFIPLFEATVDPDSHPQLHV 589
Query: 487 FLTHVIGFDSVDDESKPENPMLDTEVKSPEEWDDXXXXXXXXXXXXXXXXXTVLNHFRKG 546
FL V+GFD VDDESKPE + +P +W + VLN R+
Sbjct: 590 FLKQVVGFDLVDDESKPER-RPTKHMPTPAQWTNAFNPAFSYYVYYCYANLYVLNKLRE- 647
Query: 547 PKLKIFYDTPREQGLNTFVLRPHCGEAGPVQHLVCGLLLAENISHGLLLRKVPVXXXXXX 606
+G+ T LRPH GEAG + HL L +I+HG+ LRK PV
Sbjct: 648 -----------SKGMTTITLRPHSGEAGDIDHLAATFLTCHSIAHGINLRKSPVLQYLYY 696
Query: 607 XXXXXXXMSPLSNNSLFLNYHRNPLPEFLARGLCITLSTDDPLQFHFTKEPLMEEYSIAA 666
MSPLSNNSLFL+YHRNP P F RGL ++LSTDDPLQ H TKEPL+EEYSIAA
Sbjct: 697 LAQIGLAMSPLSNNSLFLDYHRNPFPVFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAA 756
Query: 667 QVWKLSSCDMCELARNSVLMSGFPHEMKQYWLGPNYTKEGVAGNDITRTNVPDIRISFRH 726
VWKLS+CD+CE+ARNSV SGF H +K +W+G +Y K G GNDI +TNVP IR+ FR
Sbjct: 757 SVWKLSACDLCEIARNSVYQSGFSHALKSHWIGKDYYKRGPDGNDIHKTNVPHIRVEFRD 816
Query: 727 ETILDELTNIF 737
+E+ ++
Sbjct: 817 TIWKEEMQQVY 827
>At3g06920.1 68416.m00821 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 871
Score = 29.5 bits (63), Expect = 8.6
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 203 NMYRQGPNGEER-LPYEYITLAQYIQDMNTMCNMIADGPLKSFCYRRLSYLSSKFQLHVL 261
N+ NGE PY T Q +N +CN++ GP LS LS K Q +
Sbjct: 12 NLSSLSDNGENHEKPY---TFEGNRQTVNDICNVLETGPWGPSAENTLSALSFKPQPEFV 68
Query: 262 LNELRELAS-QKAVPHRDFYNIR 283
+ LR L +A+ + +Y R
Sbjct: 69 IGVLRRLKDVNRAIEYFRWYERR 91
>At1g71460.1 68414.m08257 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 689
Score = 29.5 bits (63), Expect = 8.6
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 25/187 (13%)
Query: 176 PFRDKDPWECPMPEPKGYSIRLNRGVFNMYRQGPNGEERLPYEYITLAQYIQDMNTMCNM 235
PFR++D + +P ++R + RQ N E L T+ Y++ N
Sbjct: 58 PFRERDAFPSSLPLHSKNPYIIHRDIQIFARQN-NLEVAL-----TILDYLEQRGIPVNA 111
Query: 236 IADGPLKSFCYRRLSYLSSK-FQLHVLLNELRELASQKAVPHRDFYNIRKVDTHIHAASC 294
L C RR S L K +H+ +N L +F + V H++ A C
Sbjct: 112 TTFSALLEACVRRKSLLHGKQVHVHIRINGLES---------NEFLRTKLV--HMYTA-C 159
Query: 295 MNQKHLLRFIKKTLKTHADEVVTLHKGTPMTLRSVFQSMNLSTY----DLTVDMLDVHAD 350
+ K + ++ ++ L +GT ++ + +Q + LST+ +L VD L+V++
Sbjct: 160 GSVKDAQKVFDESTSSNVYSWNALLRGTVISGKKRYQDV-LSTFTEMRELGVD-LNVYSL 217
Query: 351 RNTFHRF 357
N F F
Sbjct: 218 SNVFKSF 224
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,539,302
Number of Sequences: 28952
Number of extensions: 737624
Number of successful extensions: 1680
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 7
length of query: 753
length of database: 12,070,560
effective HSP length: 87
effective length of query: 666
effective length of database: 9,551,736
effective search space: 6361456176
effective search space used: 6361456176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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