Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000806-TA|BGIBMGA000806-PA|IPR001365|Adenosine/AMP
deaminase, IPR006329|AMP deaminase
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536... 581 e-166
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 260 3e-69
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 34 0.48
12_01_0916 + 8959866-8959958,8960429-8960583,8960676-8961055,896... 32 1.9
10_07_0151 + 13430925-13431240,13431858-13432015,13432996-134330... 32 1.9
07_01_0363 - 2675951-2676049,2676146-2676279,2676362-2676395,267... 30 5.9
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181... 30 7.8
03_04_0229 - 19018521-19018927,19019132-19019795 30 7.8
>07_03_1778 +
29451902-29452166,29452665-29452849,29453504-29453693,
29453990-29454168,29454263-29454314,29454426-29454553,
29454920-29455099,29455209-29455276,29455364-29455506,
29455682-29455743,29455874-29455987,29456180-29456320,
29456680-29456832,29456973-29457026,29457102-29457212,
29457339-29457512,29457600-29457680,29457788-29457886,
29457905-29458057
Length = 843
Score = 581 bits (1435), Expect = e-166
Identities = 275/538 (51%), Positives = 361/538 (67%), Gaps = 16/538 (2%)
Query: 200 GVFNMYRQGPNGEERLPYEYITLAQYIQDMNTMCNMIADGPLKSFCYRRLSYLSSKFQLH 259
GV ++Y + +ER+ Y + DM+ + ++A G +++ CY+RL+ L KF LH
Sbjct: 281 GVIHVY-PNKDAKERI-YPVADATTFFTDMHYILRVLAAGDIRTVCYKRLNLLEQKFNLH 338
Query: 260 VLLNELRELASQKAVPHRDFYNIRKVDTHIHAASCMNQKHLLRFIKKTLKTHADEVVTLH 319
+++N REL +QKA PHRDFYN+RKVDTH+H ++CMNQKHLLRFIK L+ DEVV
Sbjct: 339 LMVNADRELLAQKAAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFR 398
Query: 320 KGTPMTLRSVFQSMNLSTYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRLREVFLKT 379
GT +TL+ VF+S++L+ YDL VD+LDVHAD++TFHRFDKFN KYNP G+SRLRE+FLK
Sbjct: 399 DGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQ 458
Query: 380 DNYMNGKYFARIIKEVASDLEESKYQNAELRLSVYGKSPGEWAKLAKWAIQYDVHSNNVR 439
DN + G++ A + KEV SDLE SKYQ AE R+S+YG+ EW ++A W + +++S NV
Sbjct: 459 DNLIQGRFLAELTKEVFSDLEASKYQMAEYRISIYGRKKSEWDQMASWIVNNELYSENVV 518
Query: 440 WLIQIPRLYDIFKSNKIMNDFHEFLNNIFQPLFEVTNDPNSNIELHKFLTHVIGFDSVDD 499
WLIQIPR+Y++++ +N F L+NIF PLFEVT DP S+ +LH FL V+G D VDD
Sbjct: 519 WLIQIPRIYNVYREMGTINSFQNLLDNIFLPLFEVTVDPASHPQLHVFLQQVVGLDLVDD 578
Query: 500 ESKPENPMLDTEVKSPEEWDDXXXXXXXXXXXXXXXXXTVLNHFRKGPKLKIFYDTPREQ 559
ESKPE + +PE+W + LN R+ +
Sbjct: 579 ESKPER-RPTKHMPTPEQWTNVFNPAYAYYVYYCYANLYTLNKLRE------------SK 625
Query: 560 GLNTFVLRPHCGEAGPVQHLVCGLLLAENISHGLLLRKVPVXXXXXXXXXXXXXMSPLSN 619
G+ T LRPHCGEAG + HL L + NI+HG+ L+K PV MSPLSN
Sbjct: 626 GMTTIKLRPHCGEAGDIDHLAAAFLTSHNIAHGVNLKKSPVLQYLYYLAQIGLAMSPLSN 685
Query: 620 NSLFLNYHRNPLPEFLARGLCITLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCEL 679
NSLF++YHRNP P F RGL ++LSTDDPLQ H TKEPL+EEYSIAA +WKLSSCD+CE+
Sbjct: 686 NSLFIDYHRNPFPTFFLRGLNVSLSTDDPLQIHLTKEPLVEEYSIAASLWKLSSCDLCEI 745
Query: 680 ARNSVLMSGFPHEMKQYWLGPNYTKEGVAGNDITRTNVPDIRISFRHETILDELTNIF 737
ARNSV SGF H +K +W+G NY K G GNDI +TNVP IRI FRH T+L +++F
Sbjct: 746 ARNSVYQSGFSHRLKSHWIGRNYYKRGHDGNDIHQTNVPHIRIEFRH-TLLCLESDLF 802
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 260 bits (637), Expect = 3e-69
Identities = 113/191 (59%), Positives = 144/191 (75%)
Query: 253 SSKFQLHVLLNELRELASQKAVPHRDFYNIRKVDTHIHAASCMNQKHLLRFIKKTLKTHA 312
S KF+ H++LN RE +QK PHRDFYN+RKVDTH+H ++CMNQKHLLRFIK L+
Sbjct: 351 SEKFKFHLMLNADREFLAQKTAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEP 410
Query: 313 DEVVTLHKGTPMTLRSVFQSMNLSTYDLTVDMLDVHADRNTFHRFDKFNAKYNPIGESRL 372
DEVV GT MTL+ VF+S++L+ YDL VD+LDVHAD++TFHRFDKFN KYNP G+SRL
Sbjct: 411 DEVVIFRDGTYMTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRL 470
Query: 373 REVFLKTDNYMNGKYFARIIKEVASDLEESKYQNAELRLSVYGKSPGEWAKLAKWAIQYD 432
RE+FLK DN + G++ A + K+V SDL SKYQ AE R+S+YG+ EW LA W + +
Sbjct: 471 REIFLKQDNLIQGRFLAELTKQVFSDLTASKYQMAEYRISIYGRKQSEWDNLASWIVNNE 530
Query: 433 VHSNNVRWLIQ 443
+ S NV WL+Q
Sbjct: 531 LSSENVVWLVQ 541
Score = 83.0 bits (196), Expect = 8e-16
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 442 IQIPRLYDIFKSNKIMNDFHEFLNNIFQPLFEVTNDPNSNIELHKFLTHVIGFDSVDDES 501
+ IPRLY+++K I+ F L+NIF PLFEVT DP S+ +LH FL V+G D VDDES
Sbjct: 598 LDIPRLYNVYKEMGIVTSFQTLLDNIFLPLFEVTIDPASHPQLHVFLKQVVGLDLVDDES 657
Query: 502 KPENPMLDTEVKSPEEW 518
KPE + +PE+W
Sbjct: 658 KPER-RPTKHMPTPEQW 673
Score = 46.8 bits (106), Expect = 6e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 696 YWLGPNYTKEGVAGNDITRTNVPDIRISFR 725
+W+G NY K G GNDI +TNVP IR+ FR
Sbjct: 736 HWIGKNYYKRGPTGNDIHKTNVPHIRVQFR 765
Score = 36.7 bits (81), Expect = 0.068
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 572 EAGPVQHLVCGLLLAENISHGLLLRKVPV 600
+AG + HL LL NISHG+ LRK PV
Sbjct: 697 KAGDIDHLAATFLLCHNISHGINLRKSPV 725
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 33.9 bits (74), Expect = 0.48
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 467 IFQPLFEVTNDPNSNIELHKFLTHVIGFDSVDDESKPENPMLDTEVKSPEEWD 519
I +P ++VT + +++ H FL IG+ +++ SKP + + + + E WD
Sbjct: 140 IGRPGYQVTKQYDPDMKQHSFLFE-IGYPEIEENSKPRHRFMASYEQKVESWD 191
>12_01_0916 +
8959866-8959958,8960429-8960583,8960676-8961055,
8961142-8962122,8962699-8962829
Length = 579
Score = 31.9 bits (69), Expect = 1.9
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 266 RELASQKAVPHRDFYNIRKVDTHIHAASCMNQKHLLRFIKKTLKTHADEVVTLHKGTPMT 325
R L + PH D Y I + S NQ H +F K KT+ ++ TP+
Sbjct: 179 RSLVTGNPAPHADAYTINGKPGDFYNCSAPNQTH--KFELKQNKTYMLRIINAALNTPLF 236
Query: 326 LRSVFQSMNLSTYD 339
+ S N+ D
Sbjct: 237 FKVANHSFNVVAAD 250
>10_07_0151 +
13430925-13431240,13431858-13432015,13432996-13433042,
13433818-13433881,13434795-13435243,13435618-13435848,
13436181-13436226
Length = 436
Score = 31.9 bits (69), Expect = 1.9
Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 615 SPLSNNSLFLNYHRNPLPEFLARGLCITLSTDDPLQFH 652
S L SL NPLP R LCI DDPLQ H
Sbjct: 237 SCLGKRSLNSGLRTNPLPYEFERSLCIK-HNDDPLQLH 273
>07_01_0363 -
2675951-2676049,2676146-2676279,2676362-2676395,
2676485-2676604,2676720-2676836,2676924-2677043,
2677129-2677218,2677313-2677438,2677566-2677619,
2677856-2677936,2678025-2678132,2678218-2678289,
2678885-2678947,2679476-2679646
Length = 462
Score = 30.3 bits (65), Expect = 5.9
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 405 QNAELRLSVYGKSPGEWAKLAKWAIQYDVHSNN--VRWLIQIPRLY--DIFKSNKIMNDF 460
Q +L + G++PG A + Y + S + ++ P LY ++ KSN +F
Sbjct: 369 QKRNYKLKLQGENPGRKACATTLSWVYRLKSVHPFLKVFEVTPSLYMVELRKSNGDTLEF 428
Query: 461 HEFLNNIFQPLFEVTNDPNSNI 482
H+F +NI L +V P S+I
Sbjct: 429 HKFYHNISNGLKDVMWKPESSI 450
>09_06_0230 +
21717225-21717301,21717888-21717972,21718045-21718165,
21718244-21718368,21718940-21718984,21719082-21719345,
21720067-21720111,21720182-21720212,21721644-21721693,
21722433-21724310,21724406-21724564,21724821-21724939,
21726917-21727059,21727670-21727735,21728184-21728317,
21728454-21728591,21728927-21729186,21729295-21729406,
21730727-21730909
Length = 1344
Score = 29.9 bits (64), Expect = 7.8
Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 11/125 (8%)
Query: 623 FLNYHRNPLPEFLA-RGLCITLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELAR 681
FL+ ++ L EFL +GL ++LS H++++ L EE +A + + + ++
Sbjct: 597 FLSSTQDVLCEFLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALDEAE-EAFQIKQILL 655
Query: 682 NSVLMSGFPHEMKQYWLGPNYTKEGVAGNDITRTNVPDIRISFR-HETILDELTNIFKVQ 740
N+V + H + GP+ +D T+ ++P I+ S +++ ++L K+
Sbjct: 656 NTVSIPNLKH-----YDGPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDL---LKMV 707
Query: 741 LQYPS 745
LQ+ S
Sbjct: 708 LQHVS 712
>03_04_0229 - 19018521-19018927,19019132-19019795
Length = 356
Score = 29.9 bits (64), Expect = 7.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 629 NPLPEFLARGLCITLSTDDPLQFHFTKEPLMEEYSIAAQVW 669
N L F R + L+ DP++F F KE + E SI + W
Sbjct: 69 NTLNYFSKRKPPVPLAPPDPIEFQFLKETVRELTSIMSDEW 109
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,163,081
Number of Sequences: 37544
Number of extensions: 870441
Number of successful extensions: 1776
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1767
Number of HSP's gapped (non-prelim): 13
length of query: 753
length of database: 14,793,348
effective HSP length: 88
effective length of query: 665
effective length of database: 11,489,476
effective search space: 7640501540
effective search space used: 7640501540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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