Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000805-TA|BGIBMGA000805-PA|undefined
         (75 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37149| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.2  
SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)                       26   5.0  
SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)                       26   5.0  
SB_36584| Best HMM Match : ResIII (HMM E-Value=0.95)                   25   6.6  
SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)             25   6.6  
SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)                      25   6.6  
SB_5953| Best HMM Match : FeS (HMM E-Value=5.5)                        25   6.6  
SB_40783| Best HMM Match : MH2 (HMM E-Value=0)                         25   8.7  

>SB_37149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 28 TTPLLNKRVAETHETDSCLRPTRYLQLISGVRRNNEYPTIPE 69
          T P L  R  + + T +  RP RYL+L++   + N  P + E
Sbjct: 11 TVPGLLGRCYKRYFTKNFTRPRRYLELLAPEVKTNFLPVVDE 52


>SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 380

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 22  DEEPGRTTPLLNKRVAETHETDSCLRPTRYLQLISGVRRNNEYPTI 67
           D E  R   + N+R  +      C +  R  + I GVRR  EYP +
Sbjct: 300 DSEFDRRQSVTNQRQEKARNLRECSQNAR--RTIRGVRRGREYPEV 343


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 10  KNFPFSFDVDVEDEEPGRTTPLLNK 34
           + +P+S D++ E+EE G   PL+++
Sbjct: 291 RGYPWSADMESEEEEKGEGAPLISE 315


>SB_37504| Best HMM Match : PIP5K (HMM E-Value=0)
          Length = 2119

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 8    STKNFPFSFDVDVEDEEPGRTTPLLNKRVAETHETDSC 45
            ST N PFS   D+ED     T  LL    + + +T +C
Sbjct: 1481 STSNQPFSESADIEDV---TTEMLLENETSVSQQTKAC 1515


>SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)
          Length = 569

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 13 PFSFDVDVEDEEPGRTTPLLNKRVAETHETDSCLRPT 49
          P S D  V DE+  +TTPLL        ETD   +PT
Sbjct: 41 PLSADAAV-DEDDVKTTPLLLLTAHRKIETDLYSKPT 76


>SB_36584| Best HMM Match : ResIII (HMM E-Value=0.95)
          Length = 1244

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 7    GSTKNFPFSFDVDVEDEEPGRTTPLLNKRVAETHETDS 44
            G TK+ P  F +D  D+  G T+ + + R     E  S
Sbjct: 1198 GYTKSHPQCFSIDRRDDSQGHTSVMSDSRAIAAIEGTS 1235


>SB_26663| Best HMM Match : Telo_bind (HMM E-Value=1.8e-17)
          Length = 1086

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 1   MAAGFVGSTKNFPFSFDVDVEDEE-PGRTTPLLNKRVAETHETDSCLRPTR 50
           +AA   GS  N P S    +  E+   R+ PL ++ + E H T S L  T+
Sbjct: 602 VAAKAQGSASNGPASPSGTLTPEKRKARSNPLPDENLVEQHHTASVLSATQ 652


>SB_16741| Best HMM Match : FYVE (HMM E-Value=7.1)
          Length = 556

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 26  GRTTPLLNKRVAETHETDSCLRPTRYLQLISGVRRNNEYPTIPEGV 71
           G ++  + K++AE HE     R  R+LQ  +        P  P  V
Sbjct: 177 GNSSTQIQKKIAEQHEECHLQRVARFLQARAQFHSGRLLPVAPPTV 222


>SB_5953| Best HMM Match : FeS (HMM E-Value=5.5)
          Length = 424

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 32  LNKRVAETH-ETDSCLRPTRYLQLISGVRRNNEYPTIPEGVITS 74
           L +R+ +   +T +C RP R  Q     R    + T PEG ++S
Sbjct: 365 LTQRIPKDQWKTVTCQRPERVSQCPESDRHLTSFITAPEGFLSS 408


>SB_40783| Best HMM Match : MH2 (HMM E-Value=0)
          Length = 494

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 41  ETDSCLRPTRYLQLISGVRRNNEYPTIP 68
           + + C+ P  Y ++ S V R +EYP  P
Sbjct: 118 QKEVCINPYHYHRVESPVPRQSEYPRPP 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,450
Number of Sequences: 59808
Number of extensions: 101858
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 10
length of query: 75
length of database: 16,821,457
effective HSP length: 53
effective length of query: 22
effective length of database: 13,651,633
effective search space: 300335926
effective search space used: 300335926
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)