GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000805-TA|BGIBMGA000805-PA|undefined
         (75 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0111 + 1727021-1727206,1727324-1727373,1727440-1727491,172...    25   5.9  
12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973...    25   7.8  
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221...    25   7.8  
09_01_0084 + 1202545-1202755,1202797-1203488                           25   7.8  

>09_01_0111 +
           1727021-1727206,1727324-1727373,1727440-1727491,
           1727553-1727598,1727671-1727690,1727897-1727983,
           1729290-1729466,1729542-1729565,1729639-1729725,
           1729799-1729870,1730622-1732496
          Length = 891

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 12  FPFSFDVDVEDEEPGRTTPLLNKRVAETHETDSCLRPTRYLQLISGVRRNNE 63
           F    D+DV          L N  +AE+   D C  P + L+++  V+R +E
Sbjct: 101 FDACVDMDVHTGHDLFNKVLHNMAIAESF-LDGCPDPKKLLEILGNVKRRSE 151


>12_02_0780 +
           23094989-23095380,23096132-23096573,23096687-23097311,
           23098240-23098280,23098371-23098439,23098779-23098879,
           23099422-23099500,23099946-23100044,23100123-23100191,
           23100283-23100332,23100416-23100497,23100997-23101091,
           23101263-23101395
          Length = 758

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 23  EEPGRTTPLLNKRVAETHETDSCLRPTRYLQLISGVR 59
           E P  T P     +    ETDS LRP+ + QL+  +R
Sbjct: 696 EIPSETDPQWTSLILSCWETDSQLRPS-FQQLLERLR 731


>11_01_0295 +
           2217496-2218092,2218774-2218876,2219140-2219249,
           2219328-2219399,2219653-2219814,2220300-2220510,
           2220613-2220948,2221050-2221162
          Length = 567

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 14  FSFDVDVEDEE-PGRTTPLLNKRVAETHETDSCLRPTRYLQLISGVRRNNEYPTIPEGVI 72
           F  D D E+EE P    P    +   +H + +  +P     LI+G+  ++  P+  +   
Sbjct: 86  FGADEDEEEEEGPAELPPTAADQRGASHASSNGSKPADLKDLIAGLYGSHPQPSSTDAAE 145

Query: 73  TST 75
             T
Sbjct: 146 VGT 148


>09_01_0084 + 1202545-1202755,1202797-1203488
          Length = 300

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 10 KNFPFSFDVDVEDEEPGRTTPLLNKRVAETHETDS 44
          ++FP   D+ + D  PG   P +++R+  +  +DS
Sbjct: 58 RSFPI-LDLRILDSAPGSVEPTVHRRLLSSDSSDS 91


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,855
Number of Sequences: 37544
Number of extensions: 81133
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 4
length of query: 75
length of database: 14,793,348
effective HSP length: 54
effective length of query: 21
effective length of database: 12,765,972
effective search space: 268085412
effective search space used: 268085412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)