GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000805-TA|BGIBMGA000805-PA|undefined
         (75 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclas...    26   3.7  
U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclas...    26   3.7  
Z47812-12|CAE48507.1|  719|Caenorhabditis elegans Hypothetical p...    25   4.9  
Z47812-11|CAA87796.1|  796|Caenorhabditis elegans Hypothetical p...    25   4.9  
Z47811-6|CAE48505.1|  719|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z47811-5|CAA87788.1|  796|Caenorhabditis elegans Hypothetical pr...    25   4.9  
U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related ...    25   6.4  
U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related ...    25   6.4  
AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protei...    25   6.4  
AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protei...    25   6.4  
Z69634-6|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    25   8.5  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    25   8.5  
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ...    25   8.5  

>U41109-7|AAQ62450.1| 1045|Caenorhabditis elegans Guanylyl cyclase
           protein 7, isoforma protein.
          Length = 1045

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 11  NFPFSFDVDVEDEEPGRTTPLLNKRVAETHETDSCLRPTRYLQLISGVRRNNEY--PTIP 68
           NF   FD  VE E  G T  L+ K     H  D  + PT     ++    +N +  P I 
Sbjct: 80  NFTIEFDDCVESEAAGMTVDLIEK-----HNVDVIIGPTMNQPTLAAFIVSNYFNRPIIA 134

Query: 69  EGVITS 74
            G++ +
Sbjct: 135 WGLVNA 140


>U41109-6|AAQ62451.1| 1111|Caenorhabditis elegans Guanylyl cyclase
           protein 7, isoformb protein.
          Length = 1111

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 11  NFPFSFDVDVEDEEPGRTTPLLNKRVAETHETDSCLRPTRYLQLISGVRRNNEY--PTIP 68
           NF   FD  VE E  G T  L+ K     H  D  + PT     ++    +N +  P I 
Sbjct: 80  NFTIEFDDCVESEAAGMTVDLIEK-----HNVDVIIGPTMNQPTLAAFIVSNYFNRPIIA 134

Query: 69  EGVITS 74
            G++ +
Sbjct: 135 WGLVNA 140


>Z47812-12|CAE48507.1|  719|Caenorhabditis elegans Hypothetical
           protein T05H10.7b protein.
          Length = 719

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 14  FSFDVDVEDEEPGRTTPLLNKRVAETH-ETDSCLRPTRYLQLISGVRRNN 62
           FS+  D EDEE  +  P      + TH    S  RP  Y Q  +GV  NN
Sbjct: 180 FSYGEDEEDEEEDQNVPSNKCTHSATHVAVLSDPRPKFYDQEDTGVTFNN 229


>Z47812-11|CAA87796.1|  796|Caenorhabditis elegans Hypothetical
           protein T05H10.7a protein.
          Length = 796

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 14  FSFDVDVEDEEPGRTTPLLNKRVAETH-ETDSCLRPTRYLQLISGVRRNN 62
           FS+  D EDEE  +  P      + TH    S  RP  Y Q  +GV  NN
Sbjct: 257 FSYGEDEEDEEEDQNVPSNKCTHSATHVAVLSDPRPKFYDQEDTGVTFNN 306


>Z47811-6|CAE48505.1|  719|Caenorhabditis elegans Hypothetical
           protein T05H10.7b protein.
          Length = 719

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 14  FSFDVDVEDEEPGRTTPLLNKRVAETH-ETDSCLRPTRYLQLISGVRRNN 62
           FS+  D EDEE  +  P      + TH    S  RP  Y Q  +GV  NN
Sbjct: 180 FSYGEDEEDEEEDQNVPSNKCTHSATHVAVLSDPRPKFYDQEDTGVTFNN 229


>Z47811-5|CAA87788.1|  796|Caenorhabditis elegans Hypothetical
           protein T05H10.7a protein.
          Length = 796

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 14  FSFDVDVEDEEPGRTTPLLNKRVAETH-ETDSCLRPTRYLQLISGVRRNN 62
           FS+  D EDEE  +  P      + TH    S  RP  Y Q  +GV  NN
Sbjct: 257 FSYGEDEEDEEEDQNVPSNKCTHSATHVAVLSDPRPKFYDQEDTGVTFNN 306


>U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related
          protein 2, isoform b protein.
          Length = 482

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 18 VDVEDEEPGRTTPLLNKRVAE 38
          +D+EDEE GRT    N+++ +
Sbjct: 60 LDIEDEEKGRTEQFGNEQIQQ 80


>U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related
           protein 2, isoform a protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 18  VDVEDEEPGRTTPLLNKRVAE 38
           +D+EDEE GRT    N+++ +
Sbjct: 126 LDIEDEEKGRTEQFGNEQIQQ 146


>AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protein
          protein.
          Length = 482

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 18 VDVEDEEPGRTTPLLNKRVAE 38
          +D+EDEE GRT    N+++ +
Sbjct: 60 LDIEDEEKGRTEQFGNEQIQQ 80


>AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protein
           protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 18  VDVEDEEPGRTTPLLNKRVAE 38
           +D+EDEE GRT    N+++ +
Sbjct: 126 LDIEDEEKGRTEQFGNEQIQQ 146


>Z69634-6|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 8   STKNFPFSFDVD--VEDEEPGR--TTPLLNKRVAETHETDSCLRPTRYLQLISGVRRNNE 63
           ++KNFP  FD D  +++  PG      +L K++  T +T+S   PT   Q I    ++N 
Sbjct: 618 TSKNFPIIFDADGIIKNPIPGAIYCVVILRKKIQVT-QTES---PTHKYQWIIDSAQSNP 673

Query: 64  Y 64
           +
Sbjct: 674 F 674


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 6   VGSTKNFPFSFDVDVEDEEPGRTT-PLLNKRVAETHETDSCLRPTRY 51
           + + K +   FD D ED+E    T     K+     ++D CL    Y
Sbjct: 584 IRAKKGYKEGFDDDDEDDESSEETIETRRKQRRSCQQSDDCLNNVEY 630


>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
          germ line developmentprotein 2, isoform c protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 3  AGFVGSTKNFPFSFDVDVEDEEPGRTTPLLNKRVAETHETDS 44
          +GF G T N       D+ED  P +TTPL      ET  T S
Sbjct: 10 SGFFGCTTNDSLKKG-DIED--PQKTTPLSMTDEEETFSTSS 48


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,547
Number of Sequences: 27539
Number of extensions: 76196
Number of successful extensions: 102
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 13
length of query: 75
length of database: 12,573,161
effective HSP length: 55
effective length of query: 20
effective length of database: 11,058,516
effective search space: 221170320
effective search space used: 221170320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)