Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000804-TA|BGIBMGA000804-PA|IPR008387|ATPase, F0 complex,
subunit F6, mitochondrial
         (69 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0289 - 11688733-11691342                                         26   3.3  
06_03_1136 - 27897822-27898235,27898344-27898488,27899127-278992...    25   7.5  
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63...    25   9.9  

>05_03_0289 - 11688733-11691342
          Length = 869

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 37  YGGGPGIDMTAFPSLKFEEPKLDPIDEQAAP 67
           YG   G+   A  +++ + PK DP  E AAP
Sbjct: 251 YGAAVGVTYQANDTVQIKYPKNDPDAEYAAP 281


>06_03_1136 -
           27897822-27898235,27898344-27898488,27899127-27899204,
           27899302-27899400,27900508-27900613,27901323-27901428
          Length = 315

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 38  GGGPGIDMTAFPSLKFEEPKLDPIDEQA 65
           GG PG + TA  S+   +PKL+ ++E +
Sbjct: 130 GGCPGSESTARRSVYLLKPKLNTLEEDS 157


>06_01_0079 -
          633595-633985,634346-634543,634864-635036,
          635355-635599,635683-635860,636291-636473,
          636769-636873,637709-637846,637933-638925
          Length = 867

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 49 PSLKFEEPKLDPIDEQAAP 67
          P + +E P++DP+D  A P
Sbjct: 44 PPVSYELPRIDPVDLPAIP 62


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,296
Number of Sequences: 37544
Number of extensions: 66043
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 3
length of query: 69
length of database: 14,793,348
effective HSP length: 49
effective length of query: 20
effective length of database: 12,953,692
effective search space: 259073840
effective search space used: 259073840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)