Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000804-TA|BGIBMGA000804-PA|IPR008387|ATPase, F0 complex,
subunit F6, mitochondrial
         (69 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)           25   6.4  

>SB_18684| Best HMM Match : ATP-synt_F6 (HMM E-Value=1.5e-15)
          Length = 175

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 8   QKNRGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKF 53
           QK++GGK+ D++P +             +YGG    ++  FP   F
Sbjct: 129 QKSKGGKLIDSTPEMESEIEKEREQIRKRYGGQ---NLEEFPKFDF 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.310    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,173,179
Number of Sequences: 59808
Number of extensions: 56337
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 1
length of query: 69
length of database: 16,821,457
effective HSP length: 48
effective length of query: 21
effective length of database: 13,950,673
effective search space: 292964133
effective search space used: 292964133
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)