Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000804-TA|BGIBMGA000804-PA|IPR008387|ATPase, F0 complex,
subunit F6, mitochondrial
         (69 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   4.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   4.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    18   9.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 40  GPGIDMTAFPSLKFEEP 56
           GPG+    +PS   E P
Sbjct: 355 GPGLAFLVYPSAVLELP 371


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 40  GPGIDMTAFPSLKFEEP 56
           GPG+    +PS   E P
Sbjct: 408 GPGLAFLVYPSAVLELP 424


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 37  YGGGPGIDMTAFPSLKFEEPK 57
           Y G P  + + +PS   +EPK
Sbjct: 534 YLGKPTKEDSEWPSYSRDEPK 554


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,590
Number of Sequences: 429
Number of extensions: 427
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 69
length of database: 140,377
effective HSP length: 45
effective length of query: 24
effective length of database: 121,072
effective search space:  2905728
effective search space used:  2905728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.6 bits)
S2: 35 (18.2 bits)