GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000804-TA|BGIBMGA000804-PA|IPR008387|ATPase, F0 complex,
subunit F6, mitochondrial
         (69 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    24   2.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    23   5.0  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    22   8.7  

>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 40  GPGIDMTAFPSLKFEEPKL 58
           G  +D   FPS+ FE+P L
Sbjct: 246 GTEVDSERFPSVDFEDPSL 264


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 37  YGGGPGIDMTAFPSLKFEE 55
           YG   G D  A P LK+EE
Sbjct: 218 YGFNSGGDPLAIPDLKYEE 236


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 43  IDMTAFPSLK-FEEPKLDPIDEQ 64
           IDM    S + ++ PK DP+DE+
Sbjct: 115 IDMFIHKSAELYKNPKADPLDER 137


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 294,557
Number of Sequences: 5004
Number of extensions: 7440
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 69
length of database: 2,362,478
effective HSP length: 49
effective length of query: 20
effective length of database: 2,117,282
effective search space: 42345640
effective search space used: 42345640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 45 (22.2 bits)