Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000804-TA|BGIBMGA000804-PA|IPR008387|ATPase, F0 complex,
subunit F6, mitochondrial
(69 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M73031-1|AAA58630.1| 108|Homo sapiens coupling factor 6 protein. 30 1.3
M37104-1|AAA51807.1| 108|Homo sapiens ATPase coupling factor 6 ... 30 1.3
CR456950-1|CAG33231.1| 108|Homo sapiens ATP5J protein. 30 1.3
BT007244-1|AAP35908.1| 108|Homo sapiens ATP synthase, H+ transp... 30 1.3
BC001178-1|AAH01178.1| 108|Homo sapiens ATP synthase, H+ transp... 30 1.3
AY544129-1|AAT11160.1| 108|Homo sapiens proliferation-inducing ... 30 1.3
X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for ... 27 9.4
X06268-1|CAA29604.1| 313|Homo sapiens pro-alpha 1 (II) collagen... 27 9.4
X02371-1|CAA26223.1| 288|Homo sapiens pro alpha 1(II) collagen ... 27 9.4
M63281-1|AAA52038.1| 207|Homo sapiens type II collagen protein. 27 9.4
L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen ... 27 9.4
J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein. 27 9.4
BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alph... 27 9.4
>M73031-1|AAA58630.1| 108|Homo sapiens coupling factor 6 protein.
Length = 108
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 44 DMTAFPSLKFEEPKLDPIDEQAA 66
DM FP+ KFE+PK + I++ A
Sbjct: 86 DMNTFPTFKFEDPKFEVIEKPQA 108
>M37104-1|AAA51807.1| 108|Homo sapiens ATPase coupling factor 6
subunit protein.
Length = 108
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 44 DMTAFPSLKFEEPKLDPIDEQAA 66
DM FP+ KFE+PK + I++ A
Sbjct: 86 DMNTFPTFKFEDPKFEVIEKPQA 108
>CR456950-1|CAG33231.1| 108|Homo sapiens ATP5J protein.
Length = 108
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 44 DMTAFPSLKFEEPKLDPIDEQAA 66
DM FP+ KFE+PK + I++ A
Sbjct: 86 DMNTFPTFKFEDPKFEVIEKPQA 108
>BT007244-1|AAP35908.1| 108|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit F6
protein.
Length = 108
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 44 DMTAFPSLKFEEPKLDPIDEQAA 66
DM FP+ KFE+PK + I++ A
Sbjct: 86 DMNTFPTFKFEDPKFEVIEKPQA 108
>BC001178-1|AAH01178.1| 108|Homo sapiens ATP synthase, H+
transporting, mitochondrial F0 complex, subunit F6
protein.
Length = 108
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 44 DMTAFPSLKFEEPKLDPIDEQAA 66
DM FP+ KFE+PK + I++ A
Sbjct: 86 DMNTFPTFKFEDPKFEVIEKPQA 108
>AY544129-1|AAT11160.1| 108|Homo sapiens proliferation-inducing
protein 36 protein.
Length = 108
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 44 DMTAFPSLKFEEPKLDPIDEQAA 66
DM FP+ KFE+PK + I++ A
Sbjct: 86 DMNTFPTFKFEDPKFEVIEKPQA 108
>X16468-1|CAA34488.1| 1418|Homo sapiens protein ( Human mRNA for
alpha-1 type II collagen. ).
Length = 1418
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 40 GPGIDMTAFPSLKFEEPKLDPIDEQAA 66
GPGIDM+AF L E DP+ A
Sbjct: 1146 GPGIDMSAFAGLGPREKGPDPLQYMRA 1172
>X06268-1|CAA29604.1| 313|Homo sapiens pro-alpha 1 (II) collagen
(313 AA; AA 975-271c) protein.
Length = 313
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 40 GPGIDMTAFPSLKFEEPKLDPIDEQAA 66
GPGIDM+AF L E DP+ A
Sbjct: 41 GPGIDMSAFAGLGPREKGPDPLQYMRA 67
>X02371-1|CAA26223.1| 288|Homo sapiens pro alpha 1(II) collagen
protein.
Length = 288
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 40 GPGIDMTAFPSLKFEEPKLDPIDEQAA 66
GPGIDM+AF L E DP+ A
Sbjct: 16 GPGIDMSAFAGLGPREKGPDPLQYMRA 42
>M63281-1|AAA52038.1| 207|Homo sapiens type II collagen protein.
Length = 207
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 40 GPGIDMTAFPSLKFEEPKLDPIDEQAA 66
GPGIDM+AF L E DP+ A
Sbjct: 134 GPGIDMSAFAGLGPREKGPDPLQYMRA 160
>L10347-1|AAC41772.1| 1487|Homo sapiens alpha-1 type II collagen
protein.
Length = 1487
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 40 GPGIDMTAFPSLKFEEPKLDPIDEQAA 66
GPGIDM+AF L E DP+ A
Sbjct: 1215 GPGIDMSAFAGLGPREKGPDPLQYMRA 1241
>J00116-1|AAA51997.1| 456|Homo sapiens COL2A1 protein.
Length = 456
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 40 GPGIDMTAFPSLKFEEPKLDPIDEQAA 66
GPGIDM+AF L E DP+ A
Sbjct: 184 GPGIDMSAFAGLGPREKGPDPLQYMRA 210
>BC116449-1|AAI16450.1| 1487|Homo sapiens collagen, type II, alpha 1
(primary osteoarthritis, spondyloepiphyseal dysplasi
protein.
Length = 1487
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 40 GPGIDMTAFPSLKFEEPKLDPIDEQAA 66
GPGIDM+AF L E DP+ A
Sbjct: 1215 GPGIDMSAFAGLGPREKGPDPLQYMRA 1241
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.310 0.134 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,067,576
Number of Sequences: 224733
Number of extensions: 287020
Number of successful extensions: 226
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 13
length of query: 69
length of database: 73,234,838
effective HSP length: 48
effective length of query: 21
effective length of database: 62,447,654
effective search space: 1311400734
effective search space used: 1311400734
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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