GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000804-TA|BGIBMGA000804-PA|IPR008387|ATPase, F0 complex,
subunit F6, mitochondrial
         (69 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023609-1|AAY85009.1|  159|Drosophila melanogaster IP06415p pro...    42   1e-04
AE014296-920|AAF47954.1|  147|Drosophila melanogaster CG12027-PA...    42   1e-04
X99665-1|CAA67979.1|  106|Drosophila melanogaster mitochondrial ...    41   2e-04
BT001763-1|AAN71518.1|  106|Drosophila melanogaster RH08870p pro...    41   2e-04
AE014297-3317|AAF56127.1|  106|Drosophila melanogaster CG4412-PA...    41   2e-04

>BT023609-1|AAY85009.1|  159|Drosophila melanogaster IP06415p
           protein.
          Length = 159

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 9   KNRGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPK 68
           K+  GK  D  P               QYGGG G+DM  FP  K  +  +DPI     P+
Sbjct: 54  KSPKGKPVDPGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 113


>AE014296-920|AAF47954.1|  147|Drosophila melanogaster CG12027-PA
           protein.
          Length = 147

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/60 (33%), Positives = 25/60 (41%)

Query: 9   KNRGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKFEEPKLDPIDEQAAPK 68
           K+  GK  D  P               QYGGG G+DM  FP  K  +  +DPI     P+
Sbjct: 42  KSPKGKPVDPGPEFEAELKEVTERLALQYGGGEGVDMLEFPKFKLPDIDIDPISVDDLPE 101


>X99665-1|CAA67979.1|  106|Drosophila melanogaster mitochondrial
           ATPase couplingfactor 6 subunit protein.
          Length = 106

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 8   QKNRGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKFEEPKLDPIDE 63
           QK+ GGK+ D++P +             Q+G     DM  FP  +F + K+DPI +
Sbjct: 48  QKSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>BT001763-1|AAN71518.1|  106|Drosophila melanogaster RH08870p
           protein.
          Length = 106

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 8   QKNRGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKFEEPKLDPIDE 63
           QK+ GGK+ D++P +             Q+G     DM  FP  +F + K+DPI +
Sbjct: 48  QKSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


>AE014297-3317|AAF56127.1|  106|Drosophila melanogaster CG4412-PA
           protein.
          Length = 106

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 8   QKNRGGKVPDASPAVXXXXXXXXXXXXXQYGGGPGIDMTAFPSLKFEEPKLDPIDE 63
           QK+ GGK+ D++P +             Q+G     DM  FP  +F + K+DPI +
Sbjct: 48  QKSAGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDPITQ 103


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.310    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,519,073
Number of Sequences: 52641
Number of extensions: 105876
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 5
length of query: 69
length of database: 24,830,863
effective HSP length: 49
effective length of query: 20
effective length of database: 22,251,454
effective search space: 445029080
effective search space used: 445029080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 53 (25.4 bits)