GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000804-TA|BGIBMGA000804-PA|IPR008387|ATPase, F0 complex,
subunit F6, mitochondrial
         (69 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr...    25   6.5  
Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical p...    25   6.5  
Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p...    25   6.5  
AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.      25   6.5  

>Z73909-2|CAD36493.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 48  FPSLKFEEPKLDPIDEQAAPK 68
           FPS KFE P  +P+ +   P+
Sbjct: 867 FPSNKFESPTTNPMPQSTRPQ 887


>Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 48  FPSLKFEEPKLDPIDEQAAPK 68
           FPS KFE P  +P+ +   P+
Sbjct: 867 FPSNKFESPTTNPMPQSTRPQ 887


>Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 48  FPSLKFEEPKLDPIDEQAAPK 68
           FPS KFE P  +P+ +   P+
Sbjct: 867 FPSNKFESPTTNPMPQSTRPQ 887


>Z73906-15|CAD36486.1|  921|Caenorhabditis elegans Hypothetical
           protein D2030.10b protein.
          Length = 921

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 48  FPSLKFEEPKLDPIDEQAAPK 68
           FPS KFE P  +P+ +   P+
Sbjct: 867 FPSNKFESPTTNPMPQSTRPQ 887


>Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical
           protein D2030.10a protein.
          Length = 1009

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 48  FPSLKFEEPKLDPIDEQAAPK 68
           FPS KFE P  +P+ +   P+
Sbjct: 867 FPSNKFESPTTNPMPQSTRPQ 887


>AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.
          Length = 1009

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 48  FPSLKFEEPKLDPIDEQAAPK 68
           FPS KFE P  +P+ +   P+
Sbjct: 867 FPSNKFESPTTNPMPQSTRPQ 887


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.310    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,588
Number of Sequences: 27539
Number of extensions: 46423
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 6
length of query: 69
length of database: 12,573,161
effective HSP length: 49
effective length of query: 20
effective length of database: 11,223,750
effective search space: 224475000
effective search space used: 224475000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)