GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000804-TA|BGIBMGA000804-PA|IPR008387|ATPase, F0 complex,
subunit F6, mitochondrial
         (69 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25800.1 68417.m03712 calmodulin-binding protein similar to c...    25   8.2  
At1g65710.1 68414.m07458 expressed protein ; expression supporte...    25   8.2  

>At4g25800.1 68417.m03712 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 601

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 38  GGGPGIDMTAFPSLKFEEPKLDPIDEQ 64
           GGG G D   FPS     P +   DE+
Sbjct: 529 GGGKGEDGFTFPSFMQNTPMMQGYDEE 555


>At1g65710.1 68414.m07458 expressed protein ; expression supported
          by MPSS
          Length = 455

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 41 PGIDMTAFPS--LKFEEPKLDPIDEQAAPK 68
          P +  +  PS  +K  EP ++P++E+A PK
Sbjct: 11 PSLPSSVKPSDPIKPMEPVIEPLEEEAKPK 40


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,589,525
Number of Sequences: 28952
Number of extensions: 43422
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 2
length of query: 69
length of database: 12,070,560
effective HSP length: 49
effective length of query: 20
effective length of database: 10,651,912
effective search space: 213038240
effective search space used: 213038240
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)