Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000803-TA|BGIBMGA000803-PA|IPR012336|Thioredoxin-like
fold, IPR001200|Phosducin
         (213 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)                   35   0.044
SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)            29   2.9  
SB_22360| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)                   28   6.7  
SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)              28   6.7  
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)                     27   8.8  

>SB_35176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 8/84 (9%)

Query: 55  IEEYRRKRLAEIKKLSEKPR------FGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGI 108
           +EE R KR+ ++KK+ ++ +       G   E+  +     + K    +  V+H Y+   
Sbjct: 35  LEELREKRMQQMKKMQQQKQEWVHKGHGTYSEIPSEPDFFPMTKDSPRL--VVHFYRDET 92

Query: 109 QQCALINQHLRELAVKFPYTKFLK 132
            +C ++++HL  LA K   TKF+K
Sbjct: 93  FRCKIVDKHLALLAPKHMETKFVK 116


>SB_44820| Best HMM Match : 7tm_1 (HMM E-Value=9e-15)
          Length = 456

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 2/31 (6%)

Query: 2  GIIPQK--EAEFSEADIVNMIEDTIQQKEAE 30
          GIIP+K  EAE SE  IV+M+E TI+QK  E
Sbjct: 18 GIIPEKPKEAEISEDQIVDMLEKTIKQKCTE 48


>SB_2701| Best HMM Match : Thioredoxin (HMM E-Value=4.8e-05)
          Length = 215

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 78  VREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKAIAQT 137
           ++E +       +  +  ++  V+H +      C  +N  L ELA + P+  F+K   Q 
Sbjct: 3   IQEANTVTDFDRILSSSSNVLAVVHFFAPWAPHCNQMNDVLEELAKENPHVNFIK--NQK 60

Query: 138 CIPNFPERNLPSL 150
            +      N P L
Sbjct: 61  VVDRIDGANAPEL 73


>SB_22360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 165 SHELRGTSLTCDELEYILGKVGA 187
           SH L+G SLTC  LE   G++ +
Sbjct: 22  SHTLKGVSLTCSPLEIAQGQINS 44


>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
          Length = 1133

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 129 KFLKAIAQTCIPNFPERNLPSLFVYFEGE 157
           KF+ A   + + N P+ +  +L  Y+EGE
Sbjct: 706 KFMSASLDSLVSNLPKESFKNLTTYYEGE 734


>SB_38465| Best HMM Match : Nitrophorin (HMM E-Value=0.75)
          Length = 1167

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 88  QEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKAIAQTCIPNF 142
           +E+  AG+   +VIH Y++      LI Q L++L VK   T  L  + +  +P F
Sbjct: 357 EEIAAAGR---IVIHEYRKPTDNTKLIYQDLKDLKVK-DATVNLNTLCKLTVPPF 407


>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
          Length = 1011

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 55  IEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALI 114
           IE+ +RK   + +K  ++    E + ++ +D +QE NK  +++   +   ++ I+    +
Sbjct: 801 IEKMKRKGTEDSEKFMKEVSEKEKKLIAMEDKLQECNKTIEELSANVRSSQETIES---L 857

Query: 115 NQHLRELAVKFPYTKFL 131
           +Q LR+   KF + + L
Sbjct: 858 SQMLRQEKNKFSFKEAL 874


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,227,692
Number of Sequences: 59808
Number of extensions: 225599
Number of successful extensions: 499
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 8
length of query: 213
length of database: 16,821,457
effective HSP length: 79
effective length of query: 134
effective length of database: 12,096,625
effective search space: 1620947750
effective search space used: 1620947750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)