Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000803-TA|BGIBMGA000803-PA|IPR012336|Thioredoxin-like
fold, IPR001200|Phosducin
(213 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14240.1 68418.m01664 expressed protein 118 4e-27
At3g50960.1 68416.m05580 expressed protein 59 2e-09
At5g66410.1 68418.m08376 expressed protein 55 3e-08
At2g18990.1 68415.m02216 expressed protein 42 3e-04
At3g25580.1 68416.m03181 thioredoxin-related contains weak simil... 41 7e-04
At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29... 31 0.44
At1g53300.1 68414.m06041 thioredoxin family protein contains Pfa... 31 0.59
At3g02730.1 68416.m00265 thioredoxin, putative similar to SP|P29... 29 1.8
At1g08570.1 68414.m00950 thioredoxin family protein contains Pfa... 29 2.4
At5g06690.1 68418.m00756 thioredoxin family protein low similiar... 29 3.1
At3g06730.1 68416.m00798 thioredoxin family protein contains Pfa... 28 5.5
At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)... 27 7.2
At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)... 27 7.2
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 27 7.2
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 27 7.2
At4g00700.1 68417.m00096 C2 domain-containing protein contains I... 27 9.5
>At5g14240.1 68418.m01664 expressed protein
Length = 256
Score = 118 bits (283), Expect = 4e-27
Identities = 51/110 (46%), Positives = 78/110 (70%)
Query: 55 IEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALI 114
+EEYR+KRL+E+++ ++ R+G V +SG D+V+EV +A + WVV+ LYK G+ +C+L+
Sbjct: 79 LEEYRKKRLSELREAAKVKRYGTVTPISGSDFVREVTQASAEDWVVVCLYKDGVAECSLL 138
Query: 115 NQHLRELAVKFPYTKFLKAIAQTCIPNFPERNLPSLFVYFEGEMKQQFVG 164
L EL ++P TKF+K I+ CIPN+P+ NLP+L VY G +K VG
Sbjct: 139 LGCLDELGSRYPATKFVKIISTDCIPNYPDCNLPTLLVYHHGAIKGTHVG 188
>At3g50960.1 68416.m05580 expressed protein
Length = 230
Score = 59.3 bits (137), Expect = 2e-09
Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 9/140 (6%)
Query: 61 KRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRE 120
KR E ++ ++ GE REVS D++ EV ++ + V+ H Y + +C ++++HL+
Sbjct: 69 KREVEKRESFKRQGHGEYREVSEGDFLGEVTRSEK---VICHFYHKEFYRCKIMDKHLKT 125
Query: 121 LAVKFPYTKFLKAIAQTC---IPNFPERNLPSLFVYFEGEMKQQFVGSHELRGT--SLTC 175
LA + TKF+K A+ + + LP + ++ +G + VG +L GT T
Sbjct: 126 LAPRHVDTKFIKVDAENAPFFVTKLAIKTLPCVVLFSKGVAMDRLVGFQDL-GTKDDFTT 184
Query: 176 DELEYILGKVGAVETSITED 195
++LE +L K G + E+
Sbjct: 185 NKLENVLLKKGMLSKKKKEE 204
>At5g66410.1 68418.m08376 expressed protein
Length = 230
Score = 55.2 bits (127), Expect = 3e-08
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 61 KRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRE 120
+R E ++ ++ GE REVS D++ EV ++ + V+ H Y + +C ++++HL+
Sbjct: 69 RREVEKREAFKRQGHGEYREVSEGDFLGEVTRSEK---VICHFYHKEFYRCKIMDKHLKT 125
Query: 121 LAVKFPYTKFLKAIAQTC---IPNFPERNLPSLFVYFEGEMKQQFVGSHELRG-TSLTCD 176
LA + TKF+K A+ + + LP + ++ +G + VG +L +
Sbjct: 126 LAPRHVDTKFIKMDAENAPFFVTKLAIKTLPCVILFSKGIAMDRLVGFQDLGAKDDFSTT 185
Query: 177 ELEYILGKVGAVETSITED 195
+LE +L K G + E+
Sbjct: 186 KLENLLVKKGMLSEKRKEE 204
>At2g18990.1 68415.m02216 expressed protein
Length = 211
Score = 41.9 bits (94), Expect = 3e-04
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 15/136 (11%)
Query: 55 IEEYRRKRLAEIKKLSEKPR------FGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGI 108
+E R +RL ++KK++EK + GE E+ + V KA + VV H Y++
Sbjct: 39 LEVLRERRLKQMKKMAEKKKRWISLGHGEYSEIHSEKDFFSVVKASER--VVCHFYREN- 95
Query: 109 QQCALINQHLRELAVKFPYTKFLKAIAQTCIPNFPER----NLPSLFVYFEGEMKQQFVG 164
C ++++H+ LA + T+F+K A+ P ER LP+L + ++ VG
Sbjct: 96 WPCKVMDKHMSILAKQHIETRFVKIQAEKS-PFLAERLKIVVLPTLALIKNTKVDDYVVG 154
Query: 165 SHELRG-TSLTCDELE 179
+EL G + ++LE
Sbjct: 155 FNELGGKDDFSTEDLE 170
>At3g25580.1 68416.m03181 thioredoxin-related contains weak
similarity to thioredoxin (Swiss-Prot:O17486)
[Echinococcus granulosus]
Length = 210
Score = 40.7 bits (91), Expect = 7e-04
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 55 IEEYRRKRLAEIKKLSEKPR------FGEVREV-SGQDYVQEVNKAGQDIWVVIHLYKQG 107
+E R +RL ++KK++EK + GE E+ S +D+ V + + VV H Y++
Sbjct: 39 LEVLRERRLKQMKKMAEKKKRWMSIGHGEYSEIHSEKDFFSVVKSSER---VVCHFYREN 95
Query: 108 IQQCALINQHLRELAVKFPYTKFLKAIAQTCIPNFPER----NLPSLFVYFEGEMKQQFV 163
C ++++H+ LA + T+F+K A+ P ER LP+L + ++ V
Sbjct: 96 -WPCKVMDKHMSILAKQHIETRFVKIQAEKS-PFLAERLKIVVLPTLALIKNTKVDDYVV 153
Query: 164 GSHELRG-TSLTCDELE 179
G +EL G + ++LE
Sbjct: 154 GFNELGGKDDFSTEDLE 170
>At5g16400.1 68418.m01917 thioredoxin, putative similar to SP|P29450
Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum
sativum}; contains Pfam profile: PF00085 Thioredoxin
Length = 185
Score = 31.5 bits (68), Expect = 0.44
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 76 GEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLK 132
G+V EV + V AG I VV+ +Y Q C +I +EL+ K+ FLK
Sbjct: 78 GQVTEVDKDTFWPIVKAAGDKI-VVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLK 133
>At1g53300.1 68414.m06041 thioredoxin family protein contains Pfam
profiles PF00085: Thioredoxin, PF00515: TPR Domain;
similar to tetratricopeptide repeat protein 2
(GI:7248701) [Drosophila melanogaster]; similar to DnaJ
homolog subfamily C member 7 (Tetratricopeptide repeat
protein 2) (TPR repeat protein 2) (Swiss-Prot:Q99615)
[Homo sapiens]
Length = 699
Score = 31.1 bits (67), Expect = 0.59
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 76 GEVREV-SGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKAI 134
GEV E+ S + + +N G VIH QC I+ + L ++P FLK
Sbjct: 595 GEVEEIYSLEQFKSAMNLPGVS---VIHFSTASDHQCKQISPFVDSLCTRYPSIHFLKVD 651
Query: 135 AQTC--IPNFPE-RNLPSLFVYFEGEMKQQFV 163
C I N R +P++ +Y G ++ V
Sbjct: 652 IDKCPSIGNAENVRVVPTVKIYKNGSRVKEIV 683
>At3g02730.1 68416.m00265 thioredoxin, putative similar to SP|P29450
Thioredoxin F-type, chloroplast precursor (TRX-F) {Pisum
sativum}; contains Pfam profile: PF00085 Thioredoxin
Length = 178
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 76 GEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLK 132
G+V EV + V AG+ + VV+ +Y Q C +I + L+ K+ FLK
Sbjct: 68 GQVTEVDKDTFWPIVKAAGEKL-VVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLK 123
>At1g08570.1 68414.m00950 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin; similar to ESTs gb|T46281,
gb|R83933, gb|N65879, emb|F14466, gb|N96726,
gb|AA042340, and emb|Z18150
Length = 275
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 62 RLAEIKKLSEKPRFGEVREV-SGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRE 120
R+ +K EK +RE+ S Q+ V + AG D VV+ + G C ++ + +
Sbjct: 83 RIGTAQKWWEKGLKDNMREISSAQELVDSLTNAG-DKLVVVDFFSPGCGGCKALHPKICQ 141
Query: 121 LAVKFPYTKFLK 132
A P +FL+
Sbjct: 142 FAEMNPDVQFLQ 153
>At5g06690.1 68418.m00756 thioredoxin family protein low similiarity
to SP|P34723 Thioredoxin {Penicillium chrysogenum};
contains Pfam profile: PF00085 Thioredoxin
Length = 210
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 99 VVIHLYKQGIQQCALINQHLRELAVKFPY-TKF----LKAIAQTCIPNFPERNLPSLFVY 153
++I ++C + L +LA ++ KF + + QT + +P++ ++
Sbjct: 121 IIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKMPTIQLW 180
Query: 154 FEGEMKQQFVGSHE 167
E EMK++ +G H+
Sbjct: 181 KEDEMKEEVIGGHK 194
>At3g06730.1 68416.m00798 thioredoxin family protein contains Pfam
profile: PF00085 Thioredoxin
Length = 183
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 78 VREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKF 125
V+++S Q+ +QE+ K + + +++ Y C L+ Q L LAV++
Sbjct: 77 VKKLSAQE-LQELVKGDRKVPLIVDFYATWCGPCILMAQELEMLAVEY 123
>At3g60880.2 68416.m06811 dihydrodipicolinate synthase 1 (DHDPS1)
(DHDPS) (DHPS1) identical to SP|Q9LZX6
Dihydrodipicolinate synthase 1, chloroplast precursor
(EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
Length = 365
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 IKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIW 98
I KLS+ P V+E G + V+E + G +W
Sbjct: 209 IFKLSQNPNMAGVKECVGNNRVEEYTEKGIVVW 241
>At3g60880.1 68416.m06810 dihydrodipicolinate synthase 1 (DHDPS1)
(DHDPS) (DHPS1) identical to SP|Q9LZX6
Dihydrodipicolinate synthase 1, chloroplast precursor
(EC 4.2.1.52) (DHDPS 1) {Arabidopsis thaliana}
Length = 364
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 66 IKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIW 98
I KLS+ P V+E G + V+E + G +W
Sbjct: 208 IFKLSQNPNMAGVKECVGNNRVEEYTEKGIVVW 240
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 IIPQKEAEFSEADIVNMIEDTIQQKEAEKQKQ 34
II K+A+F E D + ED + +K+ +K+K+
Sbjct: 92 IIKDKDAKFYEYDDESSEEDEVDKKDTKKKKK 123
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 113 LINQHL--RELAVKFPYTKFLKAIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHELRG 170
L+ Q L +E+A P F ++ +C+ + R L YFE + ++F+G G
Sbjct: 144 LMGQQLLDQEVAYLSPMLAFNLSLHISCLKSLVHRGNGVLEKYFEAKCDEEFIGKSAEDG 203
Query: 171 TSLTCD 176
+ + D
Sbjct: 204 SKIGLD 209
>At4g00700.1 68417.m00096 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1006
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 124 KFPYTKFLKAIAQTCIPNFPERNLPSLFVY 153
K P T L + T + FPE LP++F+Y
Sbjct: 828 KTPVTTALVHVLYTMLVTFPEMILPTVFLY 857
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,521,699
Number of Sequences: 28952
Number of extensions: 172756
Number of successful extensions: 420
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 17
length of query: 213
length of database: 12,070,560
effective HSP length: 78
effective length of query: 135
effective length of database: 9,812,304
effective search space: 1324661040
effective search space used: 1324661040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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