GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000803-TA|BGIBMGA000803-PA|IPR012336|Thioredoxin-like
fold, IPR001200|Phosducin
         (213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe...    95   7e-21
SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    38   0.001
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    28   1.2  
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M...    27   1.6  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   4.8  
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual         25   6.3  
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    25   6.3  

>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 233

 Score = 95.1 bits (226), Expect = 7e-21
 Identities = 50/191 (26%), Positives = 96/191 (50%), Gaps = 6/191 (3%)

Query: 2   GIIPQKEAEFSEADIVNMIEDT-IQQKEAEKQKQXXXXXXXXXXXXXXXXXXAVIEEYRR 60
           GI+P+KE      D+ ++++D  +  K+   + +                    ++ YR 
Sbjct: 17  GILPEKEP-----DVDDVLDDALVDAKQLAHENRLENKDLDELAELEDEEDDEFLQMYRN 71

Query: 61  KRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRE 120
           KR+ E K    K +FG V  +S  +Y  EV  A ++++VV+H+++  +  C L+   L  
Sbjct: 72  KRMQEWKDQMSKAKFGSVYPISKPEYTAEVTDASKEVFVVVHMFQDSLPACKLLAAILER 131

Query: 121 LAVKFPYTKFLKAIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHELRGTSLTCDELEY 180
           LA  +P  KF+K   +  + N+PE  +P+L +Y  G+++QQ +    L G + +  ++  
Sbjct: 132 LAPMYPQIKFVKIPGKQAVENYPEAMMPTLLIYGHGDLQQQILTLATLGGMNTSVVDVAE 191

Query: 181 ILGKVGAVETS 191
            L + GA++ S
Sbjct: 192 ALVRAGALKDS 202


>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 57  EYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQ 116
           E  +K  A ++   EK    +   V  +  V +   + +   VVIH Y     +C +I+ 
Sbjct: 117 EMLKKEFARVEAAKEKGHM-QFLTVENEREVMDFTLSSKK--VVIHFYHPDFIRCKIIDS 173

Query: 117 HLRELAVKFPYTKFLK---AIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHEL-RGTS 172
           HL ++A     TKF++   A A   +     + LP++  Y   ++  + +G  +L     
Sbjct: 174 HLEKIAKVHWETKFIRIEAANAPFLVVKLGLKVLPAVLCYVNSQLVDKIIGFADLGNKDD 233

Query: 173 LTCDELEYILGKVGAVE 189
                LE+ L K  A++
Sbjct: 234 FETSLLEFRLLKSSAID 250


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 126 PYTKFLKAIAQTCIPNFPERNLPSL 150
           P     K + ++C+PN PE+  PSL
Sbjct: 237 PMETLKKYVLESCVPNMPEKLRPSL 261


>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 214

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 53  AVIEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYV 87
           + +EE+RR    EI K   K  FG   E SG DY+
Sbjct: 72  STLEEWRRHLKEEIGKSDRKALFGNRDETSG-DYI 105


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 153  YFEGEMKQQFVGSHELRGTSLTCDELEYILGKVGAVETSITE 194
            Y++G  K      H + GT+L    L  +LGK   +    T+
Sbjct: 1072 YYDGPNKDGLASGHWVWGTTLYAAILATVLGKAALISNHWTQ 1113


>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/15 (66%), Positives = 14/15 (93%)

Query: 3   IIPQKEAEFSEADIV 17
           IIP+K+A+FSE D+V
Sbjct: 100 IIPRKKADFSENDLV 114


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 21/116 (18%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 80  EVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKAIAQ--T 137
           E++  +  QE+ + G++  ++++ Y      C  +NQ   + A       FLK  A+  +
Sbjct: 4   EITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFS 63

Query: 138 CIPNFPERNLPSLFVYFEG-EMKQQFVGSHELRGTSLTCDELEYILGKVGAVETSI 192
            I    + N   LFV   G ++  +  G++  +  +   + ++ ++ ++ +   S+
Sbjct: 64  DIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAIDEYIQPLISQISSTNASV 119


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 879,143
Number of Sequences: 5004
Number of extensions: 33356
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 74
Number of HSP's gapped (non-prelim): 7
length of query: 213
length of database: 2,362,478
effective HSP length: 70
effective length of query: 143
effective length of database: 2,012,198
effective search space: 287744314
effective search space used: 287744314
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)