Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000803-TA|BGIBMGA000803-PA|IPR012336|Thioredoxin-like
fold, IPR001200|Phosducin
(213 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0604 - 4493868-4494028,4494538-4494746,4495860-4496003,449... 126 2e-29
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 31 0.70
04_04_0554 + 26206715-26206780,26206870-26206968,26207054-262072... 29 2.8
07_03_1717 - 28958309-28958581,28958678-28958842,28958944-289591... 29 3.7
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.7
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 27 8.6
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 27 8.6
>01_01_0604 -
4493868-4494028,4494538-4494746,4495860-4496003,
4496298-4496539
Length = 251
Score = 126 bits (303), Expect = 2e-29
Identities = 53/128 (41%), Positives = 86/128 (67%)
Query: 55 IEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALI 114
+E+YRR RLAE+++ ++ +FG + ++G D+V+EV++A D+WVV+ LYK GI +C L+
Sbjct: 77 LEQYRRMRLAELREAAKAAKFGSIVPITGSDFVREVSQAPSDVWVVVFLYKDGIPECGLL 136
Query: 115 NQHLRELAVKFPYTKFLKAIAQTCIPNFPERNLPSLFVYFEGEMKQQFVGSHELRGTSLT 174
L ELA ++P TKF+K I+ CIPN+P+RN+P++ VY +K +VG + G T
Sbjct: 137 QTCLDELATRYPATKFVKIISTDCIPNYPDRNVPTILVYNNSAVKGTYVGLQKFGGKRCT 196
Query: 175 CDELEYIL 182
+ + L
Sbjct: 197 PESVALAL 204
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 53 AVIEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCA 112
A+ E+ + ++L E ++S +P E REV ++ + K G + + L ++G+
Sbjct: 551 AIAEKEKTEKLIEELEMSSEPSRAETREVISEEERYMLRKVGLKMKSFLLLGRRGVFDGT 610
Query: 113 LINQHL 118
+ N HL
Sbjct: 611 VENMHL 616
>04_04_0554 +
26206715-26206780,26206870-26206968,26207054-26207274,
26207489-26207558,26207690-26207769,26207974-26208038,
26208414-26208607
Length = 264
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 89 EVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKAIAQT 137
EV K G+D W LY + +++ L + + PY +F KA A T
Sbjct: 67 EVQKRGEDFWAEFELYAADLLVGVVVDIAL--VGLLAPYVRFGKASAST 113
>07_03_1717 -
28958309-28958581,28958678-28958842,28958944-28959120,
28959315-28959539
Length = 279
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 78 VREV-SGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLK 132
+RE+ S QD + AG + VV+ + G C ++ + +LA K P FL+
Sbjct: 95 MREIESAQDLADSLLNAGDKL-VVVDFFSPGCGGCRALHPKIAQLAEKNPEVLFLQ 149
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 76 GEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKA-I 134
GEV ++G + Q VIH QQC I+ + L ++P FLK I
Sbjct: 568 GEVEAITGMEQFQMATSLPGVS--VIHFMTPLNQQCCKISPFVNTLCTRYPSISFLKVDI 625
Query: 135 AQTCIPNFPE--RNLPSLFVYFEGEMKQQFV 163
+++ E R +P+ +Y G ++ +
Sbjct: 626 SESPAVARAENVRTVPTFKIYKNGTRVKEMI 656
>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 67 KKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFP 126
K S + F E + +V VNK WV+ L K C L++ + + FP
Sbjct: 1156 KLASMRMTFVEFGQNPATTFVDLVNKTNSTAWVLEELLK---SDCILLDN--KNIPASFP 1210
Query: 127 YTKF 130
+ KF
Sbjct: 1211 FDKF 1214
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 55 IEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYV-QEVNKAG 94
+E YRR+R ++ E R+V +YV QE+ KAG
Sbjct: 70 VEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAG 110
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,327,120
Number of Sequences: 37544
Number of extensions: 197149
Number of successful extensions: 405
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 7
length of query: 213
length of database: 14,793,348
effective HSP length: 79
effective length of query: 134
effective length of database: 11,827,372
effective search space: 1584867848
effective search space used: 1584867848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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