GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000803-TA|BGIBMGA000803-PA|IPR012336|Thioredoxin-like
fold, IPR001200|Phosducin
         (213 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-5|CAB60597.1|  258|Caenorhabditis elegans Hypothetical ...    37   0.009
AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans Prion-like-(q...    29   3.3  
Z69383-3|CAA93409.1|  261|Caenorhabditis elegans Hypothetical pr...    28   5.8  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    28   5.8  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    28   5.8  
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    27   7.7  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AL132865-5|CAB60597.1|  258|Caenorhabditis elegans Hypothetical
           protein Y62E10A.8 protein.
          Length = 258

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 55  IEEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALI 114
           +E  + KRL E++K++       V E++ +    +         + + +Y+    +C  +
Sbjct: 109 LEGLKAKRLREMRKIAAN----RVIEMTDKKQYSDAVDGSSSYLLCVLIYEPESDECEYL 164

Query: 115 NQHLRELAVKFPYTKFLKAIAQTCIPN--FPERNLPSLFVYFEGEMKQQFVGSHELRGTS 172
            + ++ LA   P TKF++A +     +  F    +P L  Y  G +   FV    + G  
Sbjct: 165 TRIVKILAADCPKTKFVRATSTLLEMSRAFRTNGVPCLQFYSNGNLIGNFVKISAILGQD 224

Query: 173 LTCDELEYIL 182
             C +L   L
Sbjct: 225 YDCKKLTKFL 234


>AC024781-3|AAK39330.2| 2203|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 85
           protein.
          Length = 2203

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 56  EEYRRKRLAEIKKLSEKPRFGEVREVSGQDYVQE 89
           E+  R+RLAEIK+L E  R  + R ++     Q+
Sbjct: 241 EQMERERLAEIKRLEEAARLEDERRIAADIEAQK 274


>Z69383-3|CAA93409.1|  261|Caenorhabditis elegans Hypothetical
           protein F13E9.6 protein.
          Length = 261

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 58  YRRKRLAEIK--KLSEKPRFGEVREVSGQDYVQEVNKAGQDIWVV 100
           YR+  +   K  K   K + G+  EV   + +Q++NK+G+  W++
Sbjct: 30  YRKPEIGNQKRVKFEVKTKVGKKYEVRTLEILQKLNKSGKQEWIL 74


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 166 HEL-RGTSLTCDELEYILGKVGAVETSI 192
           HE  RG  +T  EL+ +LG++GA+E  I
Sbjct: 160 HEAERGADVTRKELDNVLGRLGALEAEI 187


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)

Query: 166 HEL-RGTSLTCDELEYILGKVGAVETSI 192
           HE  RG  +T  EL+ +LG++GA+E  I
Sbjct: 141 HEAERGADVTRKELDNVLGRLGALEAEI 168


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/54 (24%), Positives = 28/54 (51%)

Query: 81  VSGQDYVQEVNKAGQDIWVVIHLYKQGIQQCALINQHLRELAVKFPYTKFLKAI 134
           ++  D +   + +GQDI++V+ L +  +      NQ L E   ++ + + LK +
Sbjct: 104 INSTDVLMRESGSGQDIYIVMDLMETDLLSVLKSNQTLNEKHFQYFFYQILKGL 157


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
          protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 7  KEAEFSEADIVNMIEDTIQQKEAEKQ 32
          + AE SE+ ++NM+ED + Q E + Q
Sbjct: 57 QNAEQSESSLINMLEDRLNQAENQIQ 82


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
          protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 7  KEAEFSEADIVNMIEDTIQQKEAEKQ 32
          + AE SE+ ++NM+ED + Q E + Q
Sbjct: 57 QNAEQSESSLINMLEDRLNQAENQIQ 82


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
          protein C34E11.3 protein.
          Length = 1577

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 7  KEAEFSEADIVNMIEDTIQQKEAEKQ 32
          + AE SE+ ++NM+ED + Q E + Q
Sbjct: 57 QNAEQSESSLINMLEDRLNQAENQIQ 82


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,728,547
Number of Sequences: 27539
Number of extensions: 180095
Number of successful extensions: 439
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 14
length of query: 213
length of database: 12,573,161
effective HSP length: 78
effective length of query: 135
effective length of database: 10,425,119
effective search space: 1407391065
effective search space used: 1407391065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)